DeepSEA specifications

Information


Unique identifier OMICS_13506
Name DeepSEA
Interface Web user interface
Restrictions to use None
Input data DNA sequence, chromatin regions-hg19 coordinates, variants sequence
Input format FASTA, BED, VCF
Output format ZIP, tab-delimited file
Computer skills Basic
Stability Stable
Source code URL http://deepsea.princeton.edu/media/code/deepsea.v0.94.tar.gz
Maintained Yes

Documentation


Maintainer


  • person_outline Olga G. Troyanskaya <>

Information


Unique identifier OMICS_13506
Name DeepSEA
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data DNA sequence, chromatin regions-hg19 coordinates, variants sequence
Input format FASTA, BED, VCF
Output data DNA sequence feature predictions, variant effect predictions
Output format ZIP, tab-delimited file
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


Add your version

Documentation


Maintainer


  • person_outline Olga G. Troyanskaya <>

DeepSEA article

DeepSEA institution(s)
Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA; Graduate Program in Quantitative and Computational Biology, Princeton University, Princeton, NJ, USA; Department of Computer Science, Princeton University, Princeton, NJ, USA; Simons Center for Data Analysis, Simons Foundation, New York, NY, USA
DeepSEA funding source(s)
This work was primarily supported by US National Institutes of Health (NIH) grants R01 GM071966 and R01 HG005998; and in part by the US National Science Foundation (NSF) CAREER award (DBI-0546275), NIH award T32 HG003284 and NIH grant P50 GM071508 and by the Genetic Networks program of the Canadian Institute for Advanced Research (CIFAR).

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