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deepTools | A flexible platform for exploring deep-sequencing data

A Galaxy based web server for processing and visualizing deeply sequenced data. The web server's core functionality consists of a suite of newly developed tools, called deepTools, that enable users with little bioinformatic background to explore the results of their sequencing experiments in a standardized setting. Users can upload pre-processed files with continuous data in standard formats and generate heatmaps and summary plots in a straight-forward, yet highly customizable manner.

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Gyan Prakash Mishra's avatar image Gyan Prakash Mishra's country flag

Gyan Prakash Mishra

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you have NGS datasets?, wanna know how your data looks like? visualize and explore your sequencing data in terms of correlation, heatmap, BedGraph file to visualize in IGV. This is the best tool.

deepTools forum

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deepTools classification

deepTools specifications

Unique identifier:
OMICS_08441
Interface:
Command line interface
Input data:
Sequence data
Output data:
BAM, bigWig, bedGraph, BED
Programming languages:
Python
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Input format:
BAM
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes

deepTools distribution

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deepTools forum

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deepTools classification

deepTools specifications

Unique identifier:
OMICS_08441
Restrictions to use:
None
Input format:
BAM
Programming languages:
Python
Stability:
Stable
Interface:
Web user interface
Input data:
Sequence data
Output data:
BAM, bigWig, bedGraph, BED
Computer skills:
Basic
Maintained:
Yes

deepTools support

Maintainer

  • Thomas Manke <>
  • Thomas Manke <>

Additional information

http://deeptools.readthedocs.io/en/latest/

Credits

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Publications

Institution(s)

Max Planck Institute of Immunobiology and Epigenetics, Stübeweg, Freiburg, Germany

Funding source(s)

German Research Foundation [SFB 992, Project Z01]; German Epigenome Programme DEEP [01KU1216G]

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.