DeeZ specifications

Information


Unique identifier OMICS_07442
Name DeeZ
Alternative name DeeNA-Zip
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format SAM, BAM
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for DeeNA-Zip

DeeZ in publication

PMCID: 4883269
PMID: 27075447
DOI: 10.1007/s00439-016-1658-6

[…] loss of accuracy for variant calling (yu et al. )., based on these approaches, alternative formats such as goby (campagne et al. ), slimgene (kozanitis et al. ), cram (hsi-yang fritz et al. ) and deez (hach et al. ), have been introduced that attempt to keep as much of the original information yet at a lower cost of disk space than bam. in particular, the cram format has gained a lot […]


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DeeZ institution(s)
School of Computing Science, Simon Fraser University, Burnaby, BC, Canada; Vancouver Prostate Centre, Vancouver, BC, Canada; Division of Computer Science, School of Informatics and Computing, Indiana University, Bloomington, IN, USA
DeeZ funding source(s)
Supported the Natural Sciences and Engineering Research Council of Canada (NSERC) for the Discovery Frontiers “Cancer Genome Collaboratory” project, Discovery Grants program, Genome Canada and the Vanier Canada Graduate Scholarship program.

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