DegePrime statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.


Citations per year

Citations chart

Popular tool citations

chevron_left Degenerate primer design chevron_right
Popular tools chart

Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

DegePrime specifications


Unique identifier OMICS_20459
Name DegePrime
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Mac OS
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes



Add your version


  • person_outline Anders Andersson <>

Publication for DegePrime

DegePrime in publication

PMCID: 3995771
PMID: 24755918
DOI: 10.1371/journal.pone.0095567

[…] their annotation. after first trimming the alignment to only include positions represented by 90% of the sequences (while maintaining information on where nucleotides had been removed), the program degeprime (; hugerth et al. submitted) was used to generate 18 bases long degenerate primers at every alignment position, with maximum degeneracy 12. from these, […]

To access a full list of publications, you will need to upgrade to our premium service.

DegePrime institution(s)
KTH Royal Institute of Technology, Science for Life Laboratory, School of Biotechnology, Division of Gene Technology, Stockholm, Sweden; Karolinska Institute, Department of Microbiology, Tumor and Cell Biology, Science for Life Laboratory, Stockholm, Sweden; Department of Preparedness, Swedish Institute for Communicable Disease Control, Stockholm, Sweden; Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm, Sweden
DegePrime funding source(s)
Supported by the Swedish Research Councils VR (grant 2011-5689), FORMAS (grant 2009-1174), and EC BONUS project BLUEPRINT, partially funded by FORMAS through grants; and EcoChange grant.

DegePrime reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review DegePrime