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DegPack specifications


Unique identifier OMICS_04842
Name DegPack
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for DegPack

DegPack citation


Subtype specific CpG island shore methylation and mutation patterns in 30 breast cancer cell lines

BMC Syst Biol
PMCID: 5259919
PMID: 28155687
DOI: 10.1186/s12918-016-0356-2

[…] performed to extract differentially expressed genes (deg)s. for the pair-wise gene expression comparison, linear model based limma was used, and for three class comparison, mutual information based degpack [] was used., normal breast control data were obtained from tcga data portal (measured by whole genome bisulfite sequencing (wgbs); id: tcga-a7-a0ce-11a-21d-a148-05) and from genome wide […]

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DegPack institution(s)
Department of Computer Science and Engineering, Seoul National University, Seoul, Korea; Bioinformatics Institute, Seoul National University, Seoul, Korea; Department of Computer Science, School of Informatics and Computing, Indiana University, Bloomington, IN, USA

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