DegPack statistics

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Differential expression Normalization

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DegPack specifications

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Information

Unique identifier	OMICS_04842
Name	DegPack
Interface	Web user interface
Restrictions to use	None
Computer skills	Basic
Stability	Stable
Maintained	Yes

Publication for DegPack

DegPack: a web package using a non-parametric and information theoretic algorithm to identify differentially expressed genes in multiclass RNA-seq samples.

2014 Methods

PMID: 24981074

DegPack in publication

Subtype specific CpG island shore methylation and mutation patterns in 30 breast cancer cell lines

PMCID: 5259919

PMID: 28155687

DOI: 10.1186/s12918-016-0356-2

[…] performed to extract differentially expressed genes (deg)s. for the pair-wise gene expression comparison, linear model based limma was used, and for three class comparison, mutual information based degpack [] was used., normal breast control data were obtained from tcga data portal (measured by whole genome bisulfite sequencing (wgbs); id: tcga-a7-a0ce-11a-21d-a148-05) and from genome wide […]

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DegPack institution(s)

Department of Computer Science and Engineering, Seoul National University, Seoul, Korea; Bioinformatics Institute, Seoul National University, Seoul, Korea; Department of Computer Science, School of Informatics and Computing, Indiana University, Bloomington, IN, USA

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