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DegPack specifications

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Unique identifier OMICS_04842
Name DegPack
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for DegPack

DegPack citation

library_books

Subtype specific CpG island shore methylation and mutation patterns in 30 breast cancer cell lines

2016
BMC Syst Biol
PMCID: 5259919
PMID: 28155687
DOI: 10.1186/s12918-016-0356-2

[…] performed to extract differentially expressed genes (deg)s. for the pair-wise gene expression comparison, linear model based limma was used, and for three class comparison, mutual information based degpack [] was used., normal breast control data were obtained from tcga data portal (measured by whole genome bisulfite sequencing (wgbs); id: tcga-a7-a0ce-11a-21d-a148-05) and from genome wide […]


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DegPack institution(s)
Department of Computer Science and Engineering, Seoul National University, Seoul, Korea; Bioinformatics Institute, Seoul National University, Seoul, Korea; Department of Computer Science, School of Informatics and Computing, Indiana University, Bloomington, IN, USA

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