Degradome database statistics

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Degradome database specifications

Information


Unique identifier OMICS_10577
Name Degradome database
Restrictions to use None
Maintained Yes

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
    • Rattus norvegicus

Maintainer


  • person_outline Víctor Quesada

Publications for Degradome database

Degradome database citations

 (3)
library_books

Expression Profile of the Schistosoma japonicum Degradome Reveals Differential Protease Expression Patterns and Potential Anti schistosomal Intervention Targets

2014
PLoS Comput Biol
PMCID: 4183426
PMID: 25275570
DOI: 10.1371/journal.pcbi.1003856

[…] schistosome cathepsin family, we used the above published schistosome cathepsin genes and H. sapiens cathepsin A gene (4CI9_A) as query sequences to perform a BLASTp search against our non-redundant degradome database. A total of 21 cathepsin genes were identified in the S. japonicum degradome and 20 genes in S. mansoni. The presence of cathepsin conserved domains (cd02620, cd02248, cd05490, cd05 […]

library_books

The I2 resistance gene homologues in Solanum have complex evolutionary patterns and are targeted by miRNAs

2014
BMC Genomics
PMCID: 4161772
PMID: 25178990
DOI: 10.1186/1471-2164-15-743

[…] e predicted target site of miR482. Therefore, the I2 homologues from tomato are targeted by miR6024 and may not be targeted by miR482. The cleavage of miR6024 on I2 homologues was also confirmed in a degradome database of tomato. Fourteen partial I2 cDNAs were identified in the database. One of partial ones starts from the 485th nucleotide of gene T-I2-3, confirming the cleavage function of miR602 […]

library_books

Comparative genomic analysis of the zebra finch degradome provides new insights into evolution of proteases in birds and mammals

2010
BMC Genomics
PMCID: 2865498
PMID: 20359326
DOI: 10.1186/1471-2164-11-220

[…] ed with BGmix and inspected. Prediction of chicken and human orthologues was performed by reciprocal best hit analysis. Information on the degradomes of other mammalian species was retrieved from the Degradome database http://degradome.uniovi.es. […]

Citations

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Degradome database institution(s)
Departamento de Bioquímica y Biología Molecular, Facultad de Medicina, Instituto Universitario de Oncología, Universidad de Oviedo, Oviedo, Spain
Degradome database funding source(s)
European Union [CancerDegradome-FP6 and MicroEnviMet-FP7]; Ministerio de Economía y Competitividad-Spain, Principado de Asturias and Fundación Botín (supported by Banco Santander through its Santander Universities Global Division)

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