DELISHUS specifications

Information


Unique identifier OMICS_33440
Name DELISHUS
Alternative name DELetions In shared Haplotypes Using SNPs
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Eric Morrow

Publication for DELetions In shared Haplotypes Using SNPs

DELISHUS citation

library_books

DELISHUS: an efficient and exact algorithm for genome wide detection of deletion polymorphism in autism

2012
Bioinformatics
PMCID: 3371866
PMID: 22689755
DOI: 10.1093/bioinformatics/bts234

[…] remains an unmet challenge.In this article, we presented three computational problems related to deletion inference in SNP data with a focus on small recurrent deletions in autism. We introduced the DELISHUS algorithmic framework for computing inherited deletions, de novo deletions and critical regions. Using a formulation inspired by the complexity of the deletion signature in autism, we showed […]

DELISHUS institution(s)
Department of Computer Science, Brown University, Providence, RI, USA; Center for Computational Molecular Biology, Brown University, Providence, RI, USA; School of Science and Engineering, Reykjavik University, Reykjavik, Iceland; Department of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, RI, USA; Department of Psychiatry and Human Behavior, Brown University, Providence, RI, USA
DELISHUS funding source(s)
Supported by the National Institute of Mental Health (Grant 1U24MH081810); NIMH (1K23MH080954-05); Burroughs Wellcome Fund; and the National Science Foundation (Grant 104883).

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