DELTA-BLAST pipeline

DELTA-BLAST specifications

Information


Unique identifier OMICS_14481
Name DELTA-BLAST
Alternative name Domain Enhanced Lookup Time Accelerated BLAST
Interface Web user interface
Restrictions to use None
Input data Accession number(s), gi(s), or FASTA sequence(s)*
Computer skills Basic
Stability Stable
Maintained Yes

Subtool


  • Protein BLAST

Maintainer


  • person_outline Grzegorz Boratyn <>

Publication for Domain Enhanced Lookup Time Accelerated BLAST

DELTA-BLAST IN pipelines

 (13)
2017
PMCID: 5288813
PMID: 27940543
DOI: 10.1128/AEM.03037-16

[…] (msa) with bspk and various bacterial proteases showed that bspk has some similarity to trypsin from omnitrophica bacterium but is quite distant from other currently known proteases (fig. s7). a protein blast on bspk limited to the bdellovibrionales order, followed by a clustalw alignment, resulted in a comprehensive guide tree of different predatory bacteria with homologues to bspk (fig. […]

2017
PMCID: 5323629
PMID: 28232450
DOI: 10.1128/genomeA.01677-16

[…] nucleotide sequence is 99% identical to the genome sequence of anghv1 (genbank accession no. fj940765.3) and contains 139 predicted protein-coding open reading frames (orfs), as does anghv1. protein-protein blast showed that all the amino acid sequences are 100% identical to the anghv1 counterparts, except orf1. the result suggests that the genotype of the eel herpesviruses in taiwan, including […]

2017
PMCID: 5578850
PMID: 28860252
DOI: 10.1128/genomeA.00896-17

[…] is 805 bp. this strain has two small rnas (srnas), 55 trnas, and three each of 23s, 16s, and 5s rrnas., functional annotation of b. melitensis qy1 genes within the go database (performed using protein blast, e value, ≤1e-5) showed that 2,368 (66.5%) out of 3,559 protein-coding genes had at least some biological function assigned, with some of the genes assigned to more than one category […]

2016
PMCID: 4862170
PMID: 27160854
DOI: 10.1186/s13059-016-0955-7

[…] all proteins with both an lrr domain similar to the lrr domain of either fls2 or efr and a kinase domain similar to the kinase domain of fls2. similarity searches were performed using both delta blast [45] and psi-blast [46] with the respective conserved domain. the a. thaliana refseq database was queried using a minimum e-value threshold of 1e-08, and the searches were iterated […]

2016
PMCID: 5064400
PMID: 27739446
DOI: 10.1038/srep35112

[…] table s2). predicted gene clusters in p. arizonense were connected to known pathways based on the antismash output and custom blast analysis. two genes where considered orthologous if a protein blast resulted in a global identity of more than 30% and a coverage more than 50%., the phylogenetic relationship within section canescentia and related species was inferred based on partial […]

DELTA-BLAST institution(s)
National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA
DELTA-BLAST funding source(s)
This research was supported by the Intramural Research Program of the NIH, National Library of Medicine.

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