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DeltaNet specifications

Information


Unique identifier OMICS_12367
Name DeltaNet
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Gene expression profiles
Output data The output of DeltaNet comprises a ranked list of gene target predictions.
Operating system Unix/Linux, Mac OS, Windows
Programming languages MATLAB
License BSD 2-clause “Simplified” License
Computer skills Advanced
Stability Stable
Requirements
SpaSM, GLMNET
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Rudiyanto Guwan <>

Publication for DeltaNet

DeltaNet citations

 (2)
library_books

Network perturbation analysis of gene transcriptional profiles reveals protein targets and mechanism of action of drugs and influenza A viral infection

2018
PMCID: 5887474
PMID: 29325153
DOI: 10.1093/nar/gkx1314

[…] (). several notable methods include network identification by multiple regression (nir) (), mode of action by network identification (mni) (), sparse simultaneous equation model (ssem) () and deltanet (,). in these methods, the grn is inferred from a training dataset of gene expression profiles using a linear regression derived from a dynamic mechanistic model of the gene transcriptional […]

library_books

Human impact on the microbiological water quality of the rivers

2013
PMCID: 3809112
PMID: 23813274
DOI: 10.1099/jmm.0.055749-0

[…] the coastline of the kilia distributary delta (ukraine) and 165 km comprising the sulina section, the sfântu gheorghe distributary delta and the lagoon complex razim–sinoie (romanian territory) (deltanet; www.deltanet-project.eu/)., due to transiting several countries and industrialized urban centres (), the waters of the river are exposed to human activities and factories, which contribute […]


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DeltaNet institution(s)
Institute for Chemical and Bioengineering, Zurich, ETH Zurich, Switzerland; Swiss Institute of Bioinformatics, Lausanne, Switzerland
DeltaNet funding source(s)
This work has been supported by the ETH Zurich Research Grant.

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