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Citations per year

Number of citations per year for the bioinformatics software tool DeMo

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DeMo specifications


Unique identifier OMICS_23692
Name DeMo
Alternative names Deep Motif, DeMo Dashboard (Deep Motif Dashboard)
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes




No version available


  • person_outline Jack Lanchantin
  • person_outline Ritambhara Singhrs
  • person_outline Zeming Linz
  • person_outline Yanjun Qi

Additional information

Publications for Deep Motif

DeMo citations


2015 Brainhack Proceedings

PMCID: 5103253
DOI: 10.1186/s13742-016-0147-0

[…] function. For example: To provide a reference for an entire module the cite function can be used, while functions and methods can be conveniently decorated using dcite. DueCredit comes with a simple demo code, which demonstrates its utility. Running a sample analysis produces a summary of references. At each run, the information is stored in a pickled file, and incremental runs update that file. […]


MatMRI and MatHIFU: software toolboxes for real time monitoring and control of MR guided HIFU

PMCID: 4265975
PMID: 25512856
DOI: 10.1186/2050-5736-1-7

[…] e and precisely control the transducer element driving signals of a clinical MR-HIFU system to enable acoustic pressure measurements using a hydrophone. Finally, MatMRI and MatHIFU were combined in a demo application to highlight the capabilities of these tools in pre-clinical thermal therapy applications.MatMRI substantially simplifies the acquisition and processing of real-time, dynamic MR data, […]


Mechanical Strength of 17 134 Model Proteins and Cysteine Slipknots

PLoS Comput Biol
PMCID: 2759523
PMID: 19876372
DOI: 10.1371/journal.pcbi.1000547

[…] ssed the CSK-related force peaks because we attributed the rapid force rises at the end of pulling just to stretching of the backbone without realizing existence of structure in some such rises.For a deep motif, the pattern may have several small force peaks before the final rise of the force, as observed for 2g4s and 1bj7. When the CSK motif is very deep, it usually does not have any influence o […]

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DeMo institution(s)
University of Virginia, Department of Computer Science, Charlottesville, VA, USA

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