demuxlet specifications

Unique identifier:
OMICS_23585
Interface:
Command line interface
Input data:
A file produced by the standard 10x sequencing platform or any other barcoded single cell RNA-seq (with proper --tag-UMI and --tag-group) options, a VCF/BCF file containing the genotype (GT), posterior probability (GP), or genotype likelihood (GL) to assign each barcode to a specific sample (or a pair of samples).
Output data:
A file containing the best guess of the sample identity, with detailed statistics to reach to the best guess, a file containing the statistics for matching each cell with each possible sample, a file containing the statistics similar information to the previous one, but generated for sanity checking results and a file contains the statistics for matching each cell with each possible configuration of doublet.
License:
Apache License version 2.0
Stability:
Stable
Maintained:
Yes
Software type:
Application/Script
Restrictions to use:
None
Input format:
SAM,BAM,CRAM,VCF,BCF
Operating system:
Unix/Linux
Computer skills:
Advanced
Requirements:
htslib

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demuxlet distribution

download

demuxlet support

Documentation

Maintainer

  • Hyun Min Kang <>

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