Dendroscope specifications

Information


Unique identifier OMICS_04266
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Input data Some phylogenetic trees and networks.
Input format Newick,Nexus
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Version 3.5.9
Stability Stable
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/Dendroscope

Download


Versioning


Add your version

Documentation


Maintainer


  • person_outline Daniel H. Huson <>

Dendroscope articles

Dendroscope citations

 (12)
2018
PMCID: 5851622

[…] interval of each parameter were estimated. sumt command is used to build a consensus tree from remaining 75% of sampled trees using 50% majority rule. phylogenetic trees were viewed using dendroscope 3 program[38]., gene structure display server (gsds)[39] (http://gsds.cbi.pku.edu.cn/) is used to analyze gene structure. representative gene sequences of each phyla of animal kingdom […]

2016
PMCID: 4728774

[…] trees were computed employing the maximum-likelihood estimation (mle) using mega6 with 1,000 replicates and the wag + γ + i matrix [64]. the graphical representation of trees was created with dendroscope [65]. the main rab domains showed in fig. 2 have been aligned manually. the synteny among deuterostome genomes was studied by manually mapping the genes on the scaffolds/chromosomes using […]

2014
PMCID: 4154784

[…] gtr+g+i, as determined with jmodeltest 0.1.1 [20]. we used the pseudomonas fluorescens pf0-1 as the outgroup [21]. maximum likelihood tree was constructed with raxml 7.2.8 [22] and visualized with dendroscope 3.2.10 [23]. in every case, 1000 bootstrap repetitions gave values above 900 for most branches., we genotyped all the 184 clinical isolates from the four west and central africa countries […]

2014
PMCID: 3991678

[…] program in genetyx. phylogenetic analysis of amino acid sequences was also carried out using the clustalw program available at ddbj (http://www.ddbj.nig.ac.jp/). a phylogenetic tree was built using dendroscope. tm domains of the ppklrs were predicted using the sosui program (http://bp.nuap.nagoya-u.ac.jp/sosui/)., y190 strain yeast was grown on ypd medium [10 g/l yeast extract (nakalai tesque, […]

2013
PMCID: 3842944

[…] duplications and losses were evaluated with notung [31]. intrinsically disordered regions were analyzed with foldindex [32] using a score cut-off of -0.2. phylogenetic trees were visualized with dendroscope v3 [33] or e.t.e. [34]., publicly available rna-seq datasets from tomato (solanum lycopersicum cv. heinz 1706; data sra049915) were retrieved from the sra database […]

Dendroscope institution(s)
Center for Bioinformatics (ZBIT), University of Tubingen, Germany; Department of Computer Science at the University of Auckland, New Zealand
Dendroscope funding source(s)
This work was partially supported by the ANCESTROME project the French National Research Agency (ANR)-10-IABI-0-01.

Dendroscope reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Dendroscope

Related Tools