DendroUPGMA pipeline

DendroUPGMA specifications

Information


Unique identifier OMICS_22524
Name DendroUPGMA
Alternative name Dendrogram Unweighted Pair Group Method with Arithmetic mean
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

DendroUPGMA IN pipelines

 (2)
2017
PMCID: 5575072
PMID: 28851865
DOI: 10.1038/s41598-017-06079-1

[…] respectively42. bootstrap analysis was performed with 1,000 replicates. based on the presence and absence of dna segments in the p22 pan-genome, a upgma tree was constructed using the web-server dendroupgma (http://genomes.urv.cat/upgma)., the raw sequencing data were submitted to genbank (ncbi) under the bioproject no. prjna355598., , electronic supplementary material , supplementary […]

2013
PMCID: 3662760
PMID: 23717496
DOI: 10.1371/journal.pone.0063836

[…] from gel images and converted into binary data by assigning 1 to presence or 0 to absence of a character or bands. they were then used to develop binary data matrix of a. evenia accessions. the dendroupgma software (http://genomes.urv.cat/upgma/) was used to produce for the different data sets a similarity matrix based the dice similarity coefficient and a bootstrap of 100 replicates. […]

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