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Denovo Solid Pipeline DSP

Optimizes the number of read-correction runs and computational resources via dynamic programming. Denovo Solid Pipeline is a semi-automated pipeline for short genome assembly using SOLiD sequencing data. This package has the advantage over the currently available pipeline of generating more contigs suitable for further assembly steps, increasing the chances of detecting sequencing errors and/or polymorphic sites.

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DSP classification

DSP specifications

Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Biological technology:
Life Technologies
License:
Apache License version 2.0
Stability:
Stable

DSP distribution

versioning

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No versioning.

DSP support

Maintainer

  • Victor Flores <>

Credits

Institution(s)

Center for Research and Advanced Studies National Polytechnic Institute Mexico City, Mexico

Link to literature

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