denovochipseq specifications


Unique identifier OMICS_10070
Name denovochipseq
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data The short reads from a ChIP-seq experiment of the TF being studied, and from a control experiment where non-specific antibody or input DNA is used.
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Requirements CD-HIT, meme suite, SEECER, razers, velvet
Maintained Yes


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  • person_outline Ziv Bar-Joseph <>

Publication for denovochipseq


De novo ChIP-seq analysis.

2015 Genome Biol
PMCID: 4579611
PMID: 26400819
DOI: 10.1186/s13059-015-0756-4
denovochipseq institution(s)
Department of Human Genetics, The University of Chicago, CLSC, Chicago, IL, USA; Computational Biology Department, Carnegie Mellon University, Pittsburgh, PA, USA
denovochipseq funding source(s)
The National Institute of Health (grant no. 1 U01 HL122626-01); the National Science Foundation (grant no. DBI- 1356505)

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