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DeNovoGUI specifications

Information


Unique identifier OMICS_04546
Name DeNovoGUI
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License Apache License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for DeNovoGUI

DeNovoGUI in publications

 (3)
PMCID: 5447515
PMID: 28580409
DOI: 10.1016/j.dib.2017.04.058

[…] de novo peptide sequencing was performed in order to compare results and explore peptides via sequence homology with sequenced proteins found in the entire uniprot database using blast. the program denovogui version 1.14.5 was used for this purpose , and both novor and pepnovo were used for peptide sequencing. the mass allowance parameters were, for precursor mass tolerance: 10 ppm, […]

PMCID: 5417831
PMID: 28302922
DOI: 10.1074/mcp.O117.067728

[…] study were downloaded from the ftp server (ftp://iprg_study:[email protected]) and processed as described in reference (). instead of performing traditional ms/ms database search, we used denovogui (ver. 1.14.5) () that contains the de novo sequencing software novor () to generate full-length peptide sequences directly from the ms/ms spectra, with 10 ppm precursor mass tolerance […]

PMCID: 5802045
PMID: 29450146
DOI: 10.1016/j.biopen.2017.03.001

[…] de novo peptide sequencing was performed in order to compare results and explore peptides via sequence homology with sequenced proteins found in the entire uniprot database using blastp. the program denovogui version 1.14.5 was used for this purpose , and both novor and pepnovo were used for peptide sequencing. the mass allowance parameters were, for precursor mass tolerance: 10 ppm, […]


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DeNovoGUI institution(s)
Max Planck Institute for Dynamics of Complex Technical Systems, Magdeburg, Germany

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