Deopen specifications

Information


Unique identifier OMICS_23081
Name Deopen
Alternative name Deep openness prediction network
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A DNA sequence.
Output data The chromatin accessibility.
Operating system Unix/Linux, Mac OS
Programming languages Python
License MIT License
Computer skills Advanced
Stability Stable
Requirements h5py, hickle, Scikit-learn, Theano, Lasagne, nolearn
Maintained Yes

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Maintainer


  • person_outline Rui Jiang <>

Publication for Deep openness prediction network

Deopen institution(s)
MOE Key Laboratory of Bioinformatics; Bioinformatics Division and Center for Synthetic & Systems Biology, TNLIST; Department of Automation, Tsinghua University, Beijing, China; Department of Electrical Engineering, Stanford University, Stanford, CA, USA
Deopen funding source(s)
Partially supported by the National Natural Science Foundation of China (Nos. 61721003, 61573207 and 61175002).

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