DepEst statistics

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Citations per year

Number of citations per year for the bioinformatics software tool DepEst

Tool usage distribution map

This map represents all the scientific publications referring to DepEst per scientific context
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DepEst specifications


Unique identifier OMICS_15303
Name DepEst
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data The gene expression dataset, the name of the estimator, the required arguments of the specified estimator.
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++, R
Computer skills Advanced
Version 1.1
Stability Stable
Parallel, foreach, snow, doSNOW, corpcor, Rtools
Maintained Yes




No version available


  • person_outline Gökmen Altay

Publication for DepEst

DepEst citation


Estimation of the proteomic cancer co expression sub networks by using association estimators

PLoS One
PMCID: 5690670
PMID: 29145449
DOI: 10.1371/journal.pone.0188016

[…] For the analyses, the build.mim function from the minet [], the obtain.mim function from the DepEst [] and the chooseOneHubInEachModule, adjacency, TOMsimilarity, cutreeDynamic and hclust functions from the WGCNA packages were used. The selected association estimators are indicated by the spe […]

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DepEst institution(s)
La Jolla Institute for Allergy and Immunology, CA, USA; Computer Engineering, Yildiz Technical University, Istanbul, Turkey; Department Integrative Biology & Physiology, University of California Los Angeles, CA, USA

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