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DepEst specifications


Unique identifier OMICS_15303
Name DepEst
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data The gene expression dataset, the name of the estimator, the required arguments of the specified estimator.
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++, R
Computer skills Advanced
Version 1.1
Stability Stable
Parallel, foreach, snow, doSNOW, corpcor, Rtools
Maintained Yes




No version available


  • person_outline Gökmen Altay <>

Publication for DepEst

DepEst citation


Estimation of the proteomic cancer co expression sub networks by using association estimators

PMCID: 5690670
PMID: 29145449
DOI: 10.1371/journal.pone.0188016

[…] or gene-level analyses. the required conditions are described in proposed framework section., for the analyses, the build.mim function from the minet [], the obtain.mim function from the depest [] and the chooseonehubineachmodule, adjacency, tomsimilarity, cutreedynamic and hclust functions from the wgcna packages were used. the selected association estimators are indicated […]

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DepEst institution(s)
La Jolla Institute for Allergy and Immunology, CA, USA; Computer Engineering, Yildiz Technical University, Istanbul, Turkey; Department Integrative Biology & Physiology, University of California Los Angeles, CA, USA

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