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Protocols

DEPO specifications

Information


Unique identifier OMICS_30653
Name DEPO
Alternative name Database of Evidence for Precision Oncology
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes

Additional information


https://github.com/ding-lab/publicDEPO

Publication for Database of Evidence for Precision Oncology

DEPO citations

 (6)
library_books

Structural damage to periodontal tissues at varying rate of anesthetic injection

2018
PMCID: 5932990
PMID: 29744383
DOI: 10.17245/jdapm.2018.18.2.89

[…] hetic was administered with a standard cartridge syringe using 12 mm long needle, in compliance with the recommendations on local anesthesia administration (cartridge single-use A (inch) 0.3 × 12 mm, DEPO JECT Korea).About 3 ml of blood was taken for biochemical analysis by cardiocentesis with further centrifugation and serum separation. The samples were evaluated using a standard biochemical anal […]

call_split

How to deal with ground truthing affected by human‐induced habitat change?: Identifying high‐quality habitats for the Critically Endangered Red Siskin

2017
Ecol Evol
PMCID: 5773307
PMID: 29375758
DOI: 10.1002/ece3.3628
call_split See protocol

[…] ndividuals). For records without specific geographic coordinates, we used location descriptions (place names, geographic features, etc.) to assign latitude and longitude based on gazetteers (GIS Data Depo, DIVA GIS). When contrasting coordinates were provided by each gazetteer, we calculated the mean value and error of latitude and longitude. If the error was larger than the cell resolution used t […]

library_books

Graphene edge dielectrophoretic tweezers for trapping of biomolecules

2017
Nat Commun
PMCID: 5709377
PMID: 29192277
DOI: 10.1038/s41467-017-01635-9

[…] trical forces obtained from sharp conducting tips, edges, or small gaps between electrodes. The time-averaged DEP force on a particle of radius R and in a medium of permittivity εm is expressed as 1F→DEPω=πεmR3⋅Reεp*ω-εm*ωεp*ω+2εm*ω∇E2where E is the magnitude of the electric field, εp*ω and εm*ω are the complex permittivities of the particle and the medium, respectively. For the case where electri […]

call_split

Polyol specificity of recombinant Arabidopsis thaliana sorbitol dehydrogenase studied by enzyme kinetics and in silico modeling

2015
Front Plant Sci
PMCID: 4337239
PMID: 25755662
DOI: 10.3389/fpls.2015.00091
call_split See protocol

[…] A +2 charge was assigned to the structural and catalytic zinc atoms, and sorbitol, ribitol, and xylitol were positioned for flexible docking using the ideal conformation for these ligands from Ligand depo (). The chirality of the carbon atoms was confirmed according to the ChEBI database (). The docking calculations were performed using Autodock Vina, with 250 as the exhaustiveness parameter. The […]

library_books

Draft Genome Sequence of a New Bacillus cereus Strain tsu1

2014
Genome Announc
PMCID: 4271158
PMID: 25523768
DOI: 10.1128/genomeA.01294-14

[…] d by CAP3 ().The draft genome sequence of Bacillus cereus strain tsu1 is 5.81 Mb in size with a G+C content of 34.8%. The genome contains a PhaA gene (beta keto-thiolase), PadR, PhaB, PhaC_N, and PHB_depo_C, and cellulase and hemicellulase genes. The 16s rRNA gene has a 99% identity to B. cereus and B. thuringiensis. […]

library_books

Disruption of Retinoic Acid Receptor Alpha Reveals the Growth Promoter Face of Retinoic Acid

2007
PLoS One
PMCID: 1959242
PMID: 17786207
DOI: 10.1371/journal.pone.0000836

[…] rogram (NCI, Frederick, MD). All mice were kept in a temperature-controlled room on a 12/12-h light/dark schedule, with food and water ad libitum. Mice were estrogenized by intramuscular injection of Depo-estradiol (Florida Infusion Co, Palm Harbor, FL) at 1.5 mg/kg body weight. Two days after, mice were subcutaneously inoculated in the flank region (bilaterally) with either 5×106 DNC8 cells (16 m […]

Citations

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DEPO institution(s)
Division of Oncology, Department of Medicine, Washington University, St. Louis, MO, USA; McDonnell Genome Institute, Washington University, St. Louis, MO, USA; Siteman Cancer Center, Washington University, St. Louis, MO, USA; Department of Genetics Washington University, St. Louis, MO, USA
DEPO funding source(s)
Supported by the National Cancer Institute grants R01CA178383, R01CA180006, 5U24CA10972-02, and 5U24CA211006-02. and National Human Genome Research Institute grants U01HG006517 and 1R01HG009711-01.

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