designGG statistics

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Associated diseases

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designGG specifications

Information


Unique identifier OMICS_22603
Name designGG
Interface Web user interface
Restrictions to use None
Programming languages R
License GNU General Public License version 3.0, GNU General Public License version 2.0
Computer skills Basic
Maintained No

Documentation


Maintainers


This tool is not maintained anymore.

Information


Unique identifier OMICS_22603
Name designGG
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0, GNU General Public License version 2.0
Computer skills Advanced
Version 1.1
Stability Stable
Requirements
R(≥2.2.0)
Source code URL https://cran.r-project.org/src/contrib/designGG_1.1.tar.gz
Maintained Yes

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Documentation


Maintainers


  • person_outline Yang Li <>
  • person_outline Ritsert Jansen <>
  • person_outline Morris Swertz <>
  • person_outline Gonzalo Vera <>

Publication for designGG

designGG in publications

 (2)
PMCID: 5653705
PMID: 29104520
DOI: 10.1007/s11306-017-1284-x

[…] the distribution of parental alleles in such a way that the allele distribution in the two sub-populations is as similar to each other and to the total population as possible using the r-procedure designgg (joosen et al. ; li et al. ); hence 50 ril lines were used for dry seeds and 50 lines for 6 h imbibed seeds (supplemental fig. 1). designgg is applicable to linkage analysis of experimental […]

PMCID: 3808329
PMID: 24078668
DOI: 10.1093/jxb/ert264

[…] were used for two-colour microarray experiments. distant pair design was applied for the two-colour microarray hybridization studies of dh lines as described by and implemented in the r package designgg (http://www.rug.nl/research/bioinformatics/). all microarray experiments were performed according to the manufacturer’s manual (agilent technologies)., eqtl analysis was performed using […]


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designGG institution(s)
Groningen Bioinformatics Center, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Haren, The Netherlands; Department of Genetics, University Medical Center Groningen and University of Groningen, Groningen, The Netherlands
designGG funding source(s)
Supported by the Netherlands Organization for Scientific Research, NWO-86504001.

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