DeTCT specifications

Information


Unique identifier OMICS_09576
Name DeTCT
Alternative name Differential expression Transcript Counting Technique
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Elisabeth M. Busch-Nentwich

Publication for Differential expression Transcript Counting Technique

DeTCT citation

library_books

A high resolution mRNA expression time course of embryonic development in zebrafish

2017
eLife
PMCID: 5690287
PMID: 29144233
DOI: 10.7554/eLife.30860.051

[…] plicates ().Using poly(A) pulldown RNA-seq we have generated a comprehensive polyadenylated RNA expression profile of normal zebrafish development. We have also used a 3′ end enrichment method called DeTCT, developed by us for cost-effective high-throughput polyA transcript screening (), to catalogue 3’ end usage. We have taken advantage of the large numbers of offspring and have divided the 5 day […]

DeTCT institution(s)
Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, UK
DeTCT funding source(s)
The Wellcome Trust Sanger Institute (grant number WT098051), the EU Sixth Framework Programme (ZF-MODELS, contact number LSHG-CT-2003-503496); the EU Seventh Framework Programme (ZF-HEALTH)

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