detectIR specifications

Information


Unique identifier OMICS_13772
Name detectIR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A DNA sequence, the minimal and maximal length of inverted repeats to be detected, the minimal and maximal length of imperfect inverted repeats to be detected, the maximal number of mismatches permit
Output data The detected perfect or imperfect inverted repeats, cell array containing the start and/or end positions of detected perfect or imperfect inverted repeats, the number of mismatches the detected imperfect inverted repeats contain
Operating system Unix/Linux, Windows
Programming languages MATLAB
Computer skills Advanced
Stability Stable
Maintained Yes

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Versioning


No version available

Maintainer


  • person_outline Chun Liang

Publication for detectIR

detectIR institution(s)
Department of Automation, Xiamen University, Xiamen, Fujian, China; Department of Biology, Miami University, Oxford, OH, USA; Innovation Center for Cell Biology, Xiamen University, Xiamen, Fujian, China; State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
detectIR funding source(s)
This work was supported partially by National Institutes of Health National Institute of General Medical Sciences grant (1R15GM94732-1 A1), the National Natural Science Foundation of China (61174161, 61375077 and 61201358), the Natural Science Foundation of Fujian Province of China (2012J01154), the specialized Research Fund for the Doctoral Program of Higher Education of China (20130121130004 and 20120121120038), and the Fundamental Research Funds for the Central Universities in China (2013121025, 201412G009 and CBX2014007).

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