DeviCNV specifications

Information


Unique identifier OMICS_32487
Name DeviCNV
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A set of analysis-ready binary alignment/map formatted file, a file containing the genomic position and pool information about target capture probes and a file including sample's gender information and a file with threshold for the scoring system.
Input format BAM+TSV+TSV+TSV
Output data Some graphical plots with the predicted ratios.
Operating system Unix/Linux
Programming languages Python, R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.5
Stability Stable
Requirements
sys, intervaltree, intervaltree_bio, numpy, operator, random, pysam, pyvcf, scipy, ggplot2 PSCBS
Maintained Yes

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Versioning


No version available

Documentation


Publication for DeviCNV

DeviCNV institution(s)
SD Genomics Co., Ltd., Seoul, South Korea; Department of Bio and Brain Engineering, KAIST, Daejeon, South Korea; Department of Laboratory Medicine, Yonsei University College of Medicine, Seoul, South Korea; Department of Laboratory Medicine and Genetics, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, South Korea; Division of Genetics and Genomics, Boston Children’s Hospital and Harvard Medical School, Boston, MA, USA; Department of Pediatrics, Seoul National University Children’s Hospital, Seoul National University College of Medicine, Seoul, South Korea
DeviCNV funding source(s)
Supported by the Korean Health Technology R&D Project, Ministry of Health & Welfare, Republic of Korea [A120030] and the National Research Foundation of Korea grant funded by the Ministry of Education, Science and Technology, Republic of Korea [NRF-2017R1E1A1A03070512].

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