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DEXUS | Identifying differential expression in RNA-Seq studies with unknown conditions

Identifies differentially expressed transcripts in RNA-Seq data with unknown conditions. DEXUS models read counts as a finite mixture of negative binomial distributions in which each mixture component corresponds to a condition. It decomposes read count variation into variation due to noise and variation due to differential expression. This tool can estimate only the parameters of a negative binomial for each condition in the context of known conditions.

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DEXUS forum

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DEXUS classification

DEXUS specifications

Unique identifier:
OMICS_02024
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU Lesser General Public License version 3.0
Version:
1.8.0
Requirements:
methods, BiocGenerics
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
C, R
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

DEXUS distribution

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DEXUS support

Documentation

Maintainer

  • Sepp Hochreiter <>

Credits

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Publications

Institution(s)

Institute of Bioinformatics, Johannes Kepler University, Linz, Austria

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