Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 14
Release date: May 11 2015
Last update date: Oct 10 2018
Access: Public
Diseases: Glioblastoma, Glioma, Neoplasms
Genes: SPP1, ANR1
Dataset link Identification of therapeutic targets for glioblastoma by network analysis

Experimental Protocol


Cortical neurons and astrocytes were derived from 11 days old SynapsinI-Cre and GFAP-Cre mice, respectively. The cells were cultured in their respective media to maintain their identity. These cells were then transduced with HRas-shp53 lentivirus with a transduction efficiency of >90%. The transduced neurons and astrocytes were later switched to neural stem cell media devoid of serum and supplemented with FGF-2 (NSC media). Within one week, these cells became proliferative and aggregated to form free-floating neurospheres. These cells, hereinafter referred to as NSynR53 and AGR53, respectively, were later harvested and mRNA collected for sequencing library generation using DP-seq. To assess the regression of these cells to an undifferentiated state along the differentiation axis, enriched populations of mESC and NSC were also grown in vitro and mRNA obtained from these cells were subjected to sequencing library preparation.

Repositories


GEO

GSE64411

ArrayExpress

E-GEOD-64411

ENA

SRP051463

BioProject

PRJNA270971

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Contact


vipul bhargava