DHC-MEGE specifications

Information


Unique identifier OMICS_13784
Name DHC-MEGE
Alternative name DNase Hypersensitivity Connectivity Motif Enrichment in GeneExpression
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A list of up genes and down genes, a DNase hypersensitivity connectivity map, a genome sequence
Input format BED8, FASTA
Output data A list of gene which details the occurrence of sequence motifs across the hypersensitive regions of the genome
Operating system Unix/Linux
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Mark Ziemann <>

Publication for DNase Hypersensitivity Connectivity Motif Enrichment in GeneExpression

DHC-MEGE institution(s)
Epigenetics in Human Health and Disease Laboratory; Epigenomics Profiling Facility, Baker IDI Heart & Diabetes Institute, The Alfred Medical Research and Education Precinct, Melbourne, Australia; Department of Pathology, The University of Melbourne, Australia; Central Clinical School, Department of Medicine, Monash University, Australia; Medical Bioinformatics, Baker IDI Heart & Diabetes Institute
DHC-MEGE funding source(s)
This work was supported by the Juvenile Diabetes Research Foundation International (JDRF), the National Health and Medical Research Council (NHMRC), the National Heart Foundation of Australia (NHF) and the Victorian Government’s Operational Infrastructure Support Program.

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