DHSpred specifications

Information


Unique identifier OMICS_24335
Name DHSpred
Alternative name DNase I hypersensitive sites prediction
Interface Web user interface
Restrictions to use None
Input data Some query DNA sequences.
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline Balachandran Manavalan
  • person_outline Gwang Lee

Publication for DNase I hypersensitive sites prediction

DHSpred citation

library_books

DHSpred: support vector machine based human DNase I hypersensitive sites prediction using the optimal features selected by random forest

2017
Oncotarget
PMCID: 5788611
PMID: 29416743
DOI: 10.18632/oncotarget.23099

[…] ript, with a Python script executing in the backend upon submission of DNA sequences in the FASTA format. Users can submit single or multiple sequences containing standard DNA bp in FASTA format. The DHSpred web server then outputs the results of SVM-based predictions, along with probability values. […]

DHSpred institution(s)
Department of Physiology, Ajou University School of Medicine, Suwon, Korea; Institute of Molecular Science and Technology, Ajou University, Suwon, Korea
DHSpred funding source(s)
Supported by the Basic Science Research Program through the National Research Foundation (NRF) of Korea funded by the Ministry of Education, Science and Technology (2015R1D1A1A09060192), Priority Research Centers Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education, Science and Technology (2009-0093826), and the Brain Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Science, ICT & Future Planning (2016M3C7A1904392).

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