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Dialign-Pfam specifications


Unique identifier OMICS_07487
Name Dialign-Pfam
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for Dialign-Pfam

Dialign-Pfam in publications

PMCID: 4475826
PMID: 26157359
DOI: 10.3389/fncel.2015.00222

[…] length 100 + 100 bp and ~200 mln reads in total. the transcriptome assembly was constructed de novo using trinity software (grabherr et al., ). multiple sequence alignment (msa) was constructed by dialign-pfam online tool with default parameters (al ait et al., )., two commercially available antibodies to pkmζ were selected: sc-216, and sc-11781 (santa cruz biotechnology). both were produced […]

PMCID: 4209131
PMID: 25069652
DOI: 10.1093/molbev/msu227

[…] of repeat containing proteins are not trivial, we employed several methods to obtain reliable alignments. we compared the alignments produced by muscle (), mafft using the “genapairs" option (), and dialign-pfam (), all with and without trimming by gblocks using relaxed parameters “-b5=h" (). in nearly all cases, the mafft alignment combined with gblocks yielded the best alignment as judged […]

Dialign-Pfam institution(s)
Department of Bioinformatics, University of Göttingen, Institute of Microbiology and Genetics, Göttingen, Germany

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