DIALIGN protocols

DIALIGN specifications

Information


Unique identifier OMICS_00973
Name DIALIGN
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 2.2.1
Stability Stable
Maintained Yes

Maintainer


  • person_outline Burkhard Morgenstern <>

Information


Unique identifier OMICS_00973
Name DIALIGN
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Burkhard Morgenstern <>

Publications for DIALIGN

DIALIGN IN pipelines

 (4)
2011
PMCID: 3248431
PMID: 22242127
DOI: 10.1371/journal.pone.0029501

[…] elements was indicated by a 1 or 0 for each accession analysed and was collected into a data matrix. accessions belonging to the same lmw glutenin gene type were aligned and compared using the tools dialign [33] and clc genomic workbench (clc bio). consensus promoter sequences were generated using the algorithm of clc genomic workbench and were used to characterise the promoter types. conserved […]

2007
PMCID: 2041995
PMID: 17953487
DOI: 10.1371/journal.pgen.0030180

[…] sequences from different sources for the same organism were combined. the coding regions on the genomic contigs are detailed in figure s3., multiple sequence alignments were generated using the dialign2 program [22]. zipk alignments were corrected to allow the arginine triplet at position 278–280 of the rodent sequences to align with similar triplets in the other sequences; this change […]

2007
PMCID: 2242806
PMID: 18045455
DOI: 10.1186/1471-2164-8-437

[…] searches were done as described in rueckert et al.[58] with nucleotide and amino acid sequences using the blastn- and blastp-algorithms [59]. multiple sequence alignments were performed using the dialign2 software [60]. the phylogenetic trees were calculated using the neighbor-joining method [61], which is integrated in the clustalx software package [62]. the results were visualized […]

2007
PMCID: 2248736
PMID: 18032435
DOI: 10.1093/nar/gkm1016

[…] and products at 473 nm and filtered at 520 nm (fujifilm fla-3000). note that only one cleavage product was visualized, as only one strand was fluorescein labelled., sequences were aligned with dialign (27). phylogenetic analyses were performed with mega ver. 3.1 (28), using the maximum parsimony tool, and running the default setting of 1000 bootstraps. recombination analyses were performed […]

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