DIALIGN statistics

Tool stats & trends

Looking to identify usage trends or leading experts?

Protocols

DIALIGN specifications

Information


Unique identifier OMICS_00973
Name DIALIGN
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 2.2.1
Stability Stable
Maintained Yes

Maintainer


  • person_outline Burkhard Morgenstern

Information


Unique identifier OMICS_00973
Name DIALIGN
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Download


download.png

Versioning


No version available

Maintainer


  • person_outline Burkhard Morgenstern

Publications for DIALIGN

DIALIGN citations

 (124)
library_books

Redundant CArG Box Cis motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development

2017
Front Plant Sci
PMCID: 5650620
PMID: 29085379
DOI: 10.3389/fpls.2017.01712

[…] he genome. Regions from the reciprocal Blast that aligned back to the SHP2 genomic locus were accepted as orthologs in the genomes of the respective species. Weighting scores at each base provided by Dialign-chaos across the multiple sequence alignment were converted to Genome Browser annotation tracks using Python script for viewing on TAIR. Scripts are available through github: https://github.co […]

library_books

Bacterial Foraging Optimization –Genetic Algorithm for Multiple Sequence Alignment with Multi Objectives

2017
Sci Rep
PMCID: 5562892
PMID: 28821841
DOI: 10.1038/s41598-017-09499-1

[…] d MUSCLE. The iterative approach optimizes a scoring function that leads to exact biological alignment. Some more methods that employ progressive and iterative approaches are ClustalW, Clustal Omega, DIALIGN, Match-Box, M-Coffee. COBALT tool incorporates constrains based methods into progressive method. A few tools that based on consistency approaches are K-Align and Probalign.The iterative approa […]

call_split

Evolutionary Conservation of pou5f3 Genomic Organization and Its Dynamic Distribution during Embryogenesis and in Adult Gonads in Japanese Flounder Paralichthys olivaceus

2017
Int J Mol Sci
PMCID: 5297860
PMID: 28124980
DOI: 10.3390/ijms18010231
call_split See protocol

[…] sites within the 5′ regulatory region of Popou5f3 was performed with online program MatInspector. The conserved promoter sequences between fish and mammals were analyzed by the MEME software and the Dialign software from the Genomarix suite. The websites of the software mentioned above were listed in . […]

library_books

IBBOMSA: An Improved Biogeography based Approach for Multiple Sequence Alignment

2016
Evol Bioinform Online
PMCID: 5084829
PMID: 27812276
DOI: 10.4137/EBO.S40457

[…] proposed IBBOMSA algorithm, we compare the proposed method with some of the widely used alignment algorithms such as MSAProbs, Probalign, MAFFT, Procons, Clustal Omega, T-Coffee, Kalign, MUSCLE, FSA, DIALIGN, PRANK, and CLUSTALW. shows the average TC scores of these algorithms on six subsets of BAliBASE 3.0. The data used in are drawn from Ref. , except the data about IBBOMSA. The proposed IBBOM […]

library_books

PnpProbs: a better multiple sequence alignment tool by better handling of guide trees

2016
BMC Bioinformatics
PMCID: 5009527
PMID: 27585754
DOI: 10.1186/s12859-016-1121-7

[…] offee 9.03, MAFFT 7.031, MUSCLE 3.8.31, ProbCons 1.12, CONTRAlign 2.01, Probalign 1.4, MSAProbs 0.9.7, Clustal Ω 1.1.0, GLProbs, and three of them use the non-progressive method: Align-m 2.3, PicXAA, DIALIGN. We used these tools to align families of sequences obtained from the three benchmark alignment databases, namely OXBench 1.3, SABmark 1.65 and BAliBASE 3.0. To measure the accuracy of their a […]

library_books

Glutathione Transferases Superfamily: Cold Inducible Expression of Distinct GST Genes in Brassica oleracea

2016
Int J Mol Sci
PMCID: 5000609
PMID: 27472324
DOI: 10.3390/ijms17081211

[…] r gene distribution and clustering was reported in Arabidopsis []. To examine the sequence similarity of BoGST proteins within and between the classes, multiple sequence alignment was performed using DiAlign []. As expected, the similarity within the classes was higher than that between classes. GST proteins such as BoGSTU2, BoGSTU6, BoGSTU10, BoGSTU11, BoGSTU23, BoGSTU28, BoGSTF7, BoGSTL3, and Bo […]

Citations

Looking to check out a full list of citations?

DIALIGN reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review DIALIGN