DIANA-LncBase statistics

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DIANA-LncBase specifications

Information


Unique identifier OMICS_00396
Name DIANA-LncBase
Alternative name DIANA LncBase
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Version 3.0
Maintained Yes

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

Maintainer


  • person_outline Maria D. Paraskevopoulou

Publications for DIANA-LncBase

DIANA-LncBase citations

 (4)
library_books

Comprehensive characterization of lncRNA mRNA related ceRNA network across 12 major cancers

2016
Oncotarget
PMCID: 5325432
PMID: 27580177
DOI: 10.18632/oncotarget.11637

[…] everal data sources were developed that aims to provide potential miRNA-lncRNA interactions. For example, miRcode identified miRNA target sites on lncRNAs based on targetscan prediction algorithm [], DIANA-LncBase [] and starBase [] integrated Ago CLIP-supported data to identify miRNA-lncRNA interactions, while Wang et al. [] provided a computational framework to identify lncRNA-associated competi […]

library_books

Long non coding RNA Databases in Cardiovascular Research

2016
PMCID: 4996844
PMID: 27049585
DOI: 10.1016/j.gpb.2016.03.001

[…] ated differential expression data from 217 lncRNA knockdown or overexpression experiments for human and mouse. Further interaction data between lncRNAs and other biomolecules can be found in LncReg , DIANA-LncBase , or lncRNAMap . Many of these databases provide information for human and murines only, but there are also databases specialized in other model organisms such as zflncRNApedia for zebr […]

library_books

Identification of lncRNA associated competing triplets reveals global patterns and prognostic markers for cancer

2015
Nucleic Acids Res
PMCID: 4402541
PMID: 25800746
DOI: 10.1093/nar/gkv233

[…] cRNA interactions using miRanda and predicted lncRNA function based on the ceRNA hypothesis (). However, traditional prediction methods often have a high false positive rate. This was circumvented in DIANA-LncBase by integrating AGO CLIP-Seq data into the miRNA–lncRNA identification pipeline (). This database provides experimentally verified and computationally predicted miRNA targets on lncRNAs. […]

library_books

The MicroRNA Biology of the Mammalian Nucleus

2014
Mol Ther Nucleic Acids
PMCID: 4221600
PMID: 25137140
DOI: 10.1038/mtna.2014.40

[…] of which only search for matches in 3′ UTRs of protein-coding genes), (Note: Some tools for searching any user-defined sequence for miRNA targets (RegRNA) and databases of miRNA-lncRNA interactions (DIANA-LncBase) are available to facilitate future investigations of nuclear miRNAs). Claims surrounding nuclear miRNAs also face skepticism due to concerns about the purity of nuclei preparations. How […]

Citations

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DIANA-LncBase institution(s)
DIANA-Lab, Department of Computer & Communication Engineering, University of Thessaly, Volos, Greece; Hellenic Pasteur Institute, Athens, Greece; Laboratory for Experimental Surgery and Surgical Research ‘N.S. Christeas’, Medical School of Athens, University of Athens, Athens, Greece; ‘Athena’ Research and Innovation Center, Athens, Greece; School of Electrical and Computer Engineering, NTUA, Zografou, Greece; University of Peloponnisos, Department of Informatics and Telecommunications, Tripoli, Greece; Greek Research and Technology Network (GRNET), Athens, Greece
DIANA-LncBase funding source(s)
‘Supported by ‘TOM’ [2862], ‘ARISTEIA’ Action of the ‘OPERATIONAL PROGRAMME EDUCATION AND LIFELONG LEARNING’, General Secretariat for Research and Technology, Ministry of Education, Greece, European Social Fund (ESF) and National Resources; Fondation Sante grant to Artemis Hatzigeorgiou and John S. Latsis´ Public Benefit Foundation.

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