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dicLab specifications

Information


Unique identifier OMICS_27920
Name dicLab
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Version 1.0c
Maintained Yes

Maintainer


  • person_outline Heiner Kuhl

dicLab citations

 (6)
library_books

High Throughput Sequencing and Linkage Mapping of a Clownfish Genome Provide Insights on the Distribution of Molecular Players Involved in Sex Change

2018
Sci Rep
PMCID: 5840384
PMID: 29511241
DOI: 10.1038/s41598-018-22282-0

[…] contigs associated to the mapped RAD loci in the Red Sea clownfish were used in a comparative analysis with the genomes from the following reference teleosts: European seabass (Dicentrarchus labrax, dicLab v1.0c http://seabass.mpipz.de), Asian seabass (Lates calcarifer, http://seabass.sanbi.ac.za/Lates_calcarifer/), Nile tilapia (Oreochromis niloticus, O_niloticus_UMD1) and stickleback (Gasterost […]

call_split

Linkage Mapping and Comparative Genomics of Red Drum (Sciaenops ocellatus) Using Next Generation Sequencing

2017
PMCID: 5345714
PMID: 28122951
DOI: 10.1534/g3.116.036350
call_split See protocol

[…] eus aculatus; gasAcu1), Nile tilapia (Oreochromis niloticus; onil1.1), green spotted puffer (Tetraodon nigroviridis; tnig_v8), fugu (Takifugu rubripes; FUGU5), European seabass (Dicentrarchus labrax; dicLab v1.0c), and barramundi (Lates calcarifer; v3). The pipeline first screened all mapped red drum loci for which sequences were available (2252 of 2275) for matches (e-value <1 × 10−10) to the gen […]

library_books

Mapping the sex determination locus in the hāpuku (Polyprion oxygeneios) using ddRAD sequencing

2016
BMC Genomics
PMCID: 4902995
PMID: 27286864
DOI: 10.1186/s12864-016-2773-4

[…] were used as a query for homology searches against available fish genomes with BLASTn v.2.2.28+ []. Reference sequences of Astyanax mexicanus (AstMex102), Danio rerio (GRCz10), Dicentrarchus labrax (dicLab1), Gadus morhua (gadMor1), Gasterosteus aculeatus (BROAD_S1), Latimeria chalumnae (LatCha1), Lepisosteus oculatus (LepOcu1), Oreochromis niloticus (Orenil1.1), Oryzias latipes (HdrR), Petromyzo […]

library_books

Exploring a Nonmodel Teleost Genome Through RAD Sequencing—Linkage Mapping in Common Pandora, Pagellus erythrinus and Comparative Genomic Analysis

2015
PMCID: 4777114
PMID: 26715088
DOI: 10.1534/g3.115.023432

[…] eleosts: medaka (Oryzias latipes, Ensembl 73), stickleback (Gasterosteus aculeatus, Ensembl 73), Nile tilapia (Oreochromis niloticus, ncbi GCA_000188235.2) and European seabass (Dicentrarchus labrax, dicLab v1.0c http://seabass.mpipz.de). Common pandora RAD loci sequences were extracted from the MySQL database built through Stacks pipeline, and were used in BLASTN sequence similarity searches agai […]

call_split

Construction of a high density linkage map and fine mapping of QTL for growth in Asian seabass

2015
Sci Rep
PMCID: 4639833
PMID: 26553309
DOI: 10.1038/srep16358
call_split See protocol

[…] All mapped loci and paired-end contigs were aligned against the genome and annotation of European seabass (dicLab1), Nile tilapia (Orenil1.1) and stickleback (Gasterosterus aculeatus, Broad v1.0) using the program GMAP v13.8.19 and SNPdat v1.0.5 with default parameters. Considering the divergence between A […]

library_books

Diversity, Molecular Characterization and Expression of T Cell Receptor γ in a Teleost Fish, the Sea Bass (Dicentrarchus labrax, L)

2012
PLoS One
PMCID: 3485050
PMID: 23133531
DOI: 10.1371/journal.pone.0047957

[…] noted in the two clones within the first loop of the V-DOMAIN, whereas the C-DOMAIN is well conserved. A putative 20 amino acid signal peptide was predicted in these two full length sequences (names Diclab1 and Diclab2) as well as nine O-glycosilation sites but no potential N-glycosylation. Comparison of the sea bass TRG Diclab1 nucleotide and amino acid sequence to its closest counterparts in ot […]

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