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dictyExpress specifications

Information


Unique identifier OMICS_18924
Name dictyExpress
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 2.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline Rafael Rosengarten <>

Publication for dictyExpress

dictyExpress in publications

 (24)
PMCID: 5890168
PMID: 29662839
DOI: 10.3389/fcimb.2018.00073

[…] expressed upon bacterial challenge; and (iii) most importantly with respect to immunity, apld is reported to be primarily transcribed during the multicellular stages (dicty express: https://dictyexpress.research.bcm.edu/bcm/#/all?genes=ddb_g0293010)., at the protein level, we characterized the ability of apld to permeabilize the membranes of live bacteria and liposomes by monitoring […]

PMCID: 5824019
PMID: 29385672
DOI: 10.14348/molcells.2018.2170

[…] development of dictyostelium cells, our results suggest that cbp7 should be maintained at low levels at the aggregation stage of development. in support of this conclusion, it has been reported by dictyexpress and that cbp7 is not expressed in the vegetative state, is expressed during the slug stage of development, and then disappears at the late culmination stage (; )., we propose one […]

PMCID: 5282741
PMID: 28143409
DOI: 10.1186/s12864-017-3505-0

[…] of very low sequence similarity between them. ddb_g0292950 codes for a hypothetical protein which is not conserved in other dictyostelids and is poorly expressed (rpkm <1) at all time points in dictyexpress []. the three transcripts match across different parts of ddb_g0292950 indicating that they are different parts of the same larger gene. all transcripts identified in table […]

PMCID: 5295588
PMID: 27932387
DOI: 10.1534/g3.116.037150

[…] upon request. file s9 contains the varscan output from the trna analysis. further, upon publication, all transcriptome data from this study may be explored and compared to previous works at www.dictyexpress.org. , the protein-coding transcriptome of d. discoideum has been characterized extensively, most recently by exploring changes in mrna abundance every 1–2 hr over the 24 hr course […]

PMCID: 5012570
PMID: 27597994
DOI: 10.1371/journal.pone.0162065

[…] that the genes are transcribed and do not represent pseudogenes. all pcr products had the predicted size of approximately 700 bp. expressed sequence tag data (est) and expression time courses from dictyexpress (dictybase.org) provide further support for the gene transcription pattern we describe here (). the three tsps from vegetative amoebae, tspa, tspc and tspd, were used […]


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dictyExpress institution(s)
Genialis d.o.o., Ljubljana, Slovenia; Genialis Inc., Houston, TX, USA; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA; Faculty of Computer and Information Science, University of Ljubljana, Ljubljana, Slovenia
dictyExpress funding source(s)
Supported from the grant from NIH (P01-HD39691), the Keck Center of the Gulf Coast Consortia, Training Program in Biomedical Informatics, National Library of Medicine (T15LM007093-21, PI Tony Gorry, Rice University), ARRS (P2-0209, J2-5480), and European Commission (Health-F5-2010-242038).

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