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dictyExpress specifications

Information


Unique identifier OMICS_18924
Name dictyExpress
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 2.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline Rafael Rosengarten

Publication for dictyExpress

dictyExpress citations

 (12)
library_books

The novel RacE binding protein GflB sharpens Ras activity at the leading edge of migrating cells

2016
Mol Biol Cell
PMCID: 4865317
PMID: 27009206
DOI: 10.1091/mbc.E15-11-0796

[…] cing study showed that the expression of GflB, but not GflD or GefD, is up-regulated during differentiation into multicellular fruiting bodies, which requires chemotaxis (Supplemental Figure S1C; www.dictyexpress.org; ). This expression pattern of GflB suggests that GflB may function in developmentally regulated chemotaxis.To confirm interactions between GflB and RacE in cells, we performed pulldo […]

library_books

Implications of expansin like 3 gene in Dictyostelium morphogenesis

2015
Springerplus
PMCID: 4408306
PMID: 25932374
DOI: 10.1186/s40064-015-0964-0

[…] ression of the expL3 gene is late stage-specific (Figure ) in the present study. The reason for this discrepancy is unknown; however, the RT-PCR profile obtained in this study almost matched with the dictyExpress RNA-sequencing (RNA-Seq) database (Parikh et al., ; Additional file : Table S2). The RNA-seq database indicates that most of the expansin-like family genes in Dictyostelium are expressed […]

library_books

RasG signaling is important for optimal folate chemotaxis in Dictyostelium

2014
BMC Cell Biol
PMCID: 4021067
PMID: 24742374
DOI: 10.1186/1471-2121-15-13

[…] h phase and shown to have different mobilities on electrophoresis gels [,]. Extremely low transcript levels argue that the remaining 6 ras gene products are unlikely to be detectable by Western Blot (DictyExpress). Therefore, the levels and identities of different Ras proteins can be identified using a non-specific Pan-Ras antibody.Firstly, there was no evidence of any novel Ras isoform in the bac […]

library_books

A PIP5 Kinase Essential for Efficient Chemotactic Signaling

2014
Curr Biol
PMCID: 3969243
PMID: 24485835
DOI: 10.1016/j.cub.2013.12.052

[…] synthesis. This supports RNA sequencing expression data showing that PikI is highly expressed throughout development and is the most highly expressed PIP5K during vegetative growth (data from http://dictyexpress.biolab.si/). None of the other labeled phospholipids were significantly altered (M and S1N). These results demonstrate that PikI, and therefore PI(4,5)P2 itself, plays a crucial role in c […]

library_books

Loss of the Histidine Kinase DhkD Results in Mobile Mounds during Development of Dictyostelium discoideum

2013
PLoS One
PMCID: 3783435
PMID: 24086589
DOI: 10.1371/journal.pone.0075618

[…] lopment as the cells aggregated and formed loose mounds. This higher level was maintained at least out to 20 or the mid culminant stage. RNA-seq data give a similar pattern of mRNA expression (http://dictyexpress.biolab.si/).The intergenic sequence upstream of the dkhD gene along with the first seven codons of the coding region were fused to coding region of a rapidly degrading version of β-galact […]

library_books

A Rare Combination of Ribonucleotide Reductases in the Social Amoeba Dictyostelium discoideum*

2013
PMCID: 3605638
PMID: 23372162
DOI: 10.1074/jbc.M112.442434

[…] Experimental Procedures”). In addition, we confirmed the presence of nrdJ mRNA in growing cells by reverse transcription-PCR (B). Our expression data largely agree with RNA-seq data available via the dictyExpress database (, ) showing that nrdA and nrdB abundance is strongly increased during development and nrdJ mRNA is present at very low levels. Moreover, the existence of nrdA, nrdB, and nrdJ ex […]


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dictyExpress institution(s)
Genialis d.o.o., Ljubljana, Slovenia; Genialis Inc., Houston, TX, USA; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA; Faculty of Computer and Information Science, University of Ljubljana, Ljubljana, Slovenia
dictyExpress funding source(s)
Supported from the grant from NIH (P01-HD39691), the Keck Center of the Gulf Coast Consortia, Training Program in Biomedical Informatics, National Library of Medicine (T15LM007093-21, PI Tony Gorry, Rice University), ARRS (P2-0209, J2-5480), and European Commission (Health-F5-2010-242038).

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