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DictyOGlyc specifications

Information


Unique identifier OMICS_02443
Name DictyOGlyc
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Invertebrates
    • Dictyostelium discoideum

Maintainer


  • person_outline Ramneek Gupta

Publication for DictyOGlyc

DictyOGlyc citations

 (8)
library_books

Characterization of a New Protein Family Associated With the Silica Deposition Vesicle Membrane Enables Genetic Manipulation of Diatom Silica

2017
Sci Rep
PMCID: 5647440
PMID: 29044150
DOI: 10.1038/s41598-017-13613-8

[…] rom the EXPASY online server. Signal peptide and transmembrane domains were predicted using SignalP and TMHMM respectively. The potential sites of post-translational modification were predicted using DictyOGlyc 1.1, NetCGlyc 1.0, NetNGlyc 1.0, YinOYang 1.2,, and NetPhos 2.0 from the EXPASY online server. […]

library_books

Molecular Cloning and Characterization of a Novel P450 Gene Encoding CYP6BK18 From Dastarcus helophoroides (Coleoptera: Bothrideridae)

2014
PMCID: 5633938
PMID: 25434036
DOI: 10.1093/jisesa/ieu105

[…] ( http://genome.cbs.dtu.dk/services/TMHMM/ ). ProtScale analysis of protein hydrophobicity was performed with ExPASy protein analysis expert system ( http://us.expasy.org/tools/protscale.html ). The DictyOGlyc online software and NetPhos2.0 Server Analysis were used to search the protein post-translational modification of glycosylation sites ( http://www.cbs.dtu.dk/services/DictyOGlyc/ ) and phos […]

library_books

Cloning, Expression Analysis, and Molecular Modeling of the Gamma Aminobutyric Acid Receptor Alpha2 Subunit Gene from the Common Cutworm, Spodoptera litura

2013
PMCID: 3740917
PMID: 23909412
DOI: 10.1673/031.013.4901

[…] diction was performed with online software TMHMM Server v. 2.0 (http://www.cbs.dtu.dk/services/TMHMM/).N-glycosylation, O-glycosylation, and phosphorylation sites was analyzed by NetNGlyc 1.0 Server, DictyOGlyc 1.1 Server, and NetPhos 2.0 Server (Center for Biological Sequence Analysis, www.cbs.dtu.dk) respectively (). The secondary structure of SlGABARĪ±2 was analyzed using the online software PHD […]

library_books

Susceptibility towards Enterotoxigenic Escherichia coli F4ac Diarrhea Is Governed by the MUC13 Gene in Pigs

2012
PLoS One
PMCID: 3440394
PMID: 22984528
DOI: 10.1371/journal.pone.0044573

[…] ults from the sequences with repeat number varying from 10 to 100. The protein domains were identified using Pfam ; the GlcNAc O-glycosylation sites and N-Glycosylation sites were predicted using the DictyOGlyc and NetNGlyc server, respectively ; the coil-coiled structures were analyzed using COILS ; and the disorder regions were predicted using RONN . […]

library_books

Molecular Cloning and Characterization of First Organic Matrix Protein from Sclerites of Red Coral, Corallium rubrum*

2012
PMCID: 3365975
PMID: 22505718
DOI: 10.1074/jbc.M112.352005

[…] is () were carried out to identify homologous sequences in UniProt () and GenBank database on the NCBI server (). From the EXPASY online server, the putative glycosylation sites were identified using DictyOGlyc1.1, NetCGlyc 1.0, NetNGlyc 1.0, YinOYang1.2; phosphorylation sites with NetPhos2.0; and the signal peptide with SignalP 4.0. The subcellular localization were predicted using TargetP 1.1 () […]

library_books

Identification, Characterization, and Expression of a Novel P450 Gene Encoding CYP6AE25 from the Asian Corn Borer, Ostrinia furnacalis

2011
PMCID: 3281464
PMID: 21529257
DOI: 10.1673/031.011.0137

[…] that the N terminal of CYP6AE25 protein is a highly hydrophobic domain that contains a transmembrane domain, area number 2 from the peptide chain beginning to the end of the first 21 amino acids (). DictyOGlyc projections () indicated the sugar-free glycosylation in CYP6AE25. NetPhos2.0 Server phosphorylation site analysis () of CYP6AE25 showed that there were 9 serine (Ser) phosphorylation sites […]

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DictyOGlyc institution(s)
Department of Biotechnology, Technical University of Denmark, Lyngby, Denmark

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