Diff-seq statistics

info info

Citations per year


Popular tool citations

chevron_left SNP detection chevron_right

Tool usage distribution map

Tool usage distribution map
info info

Associated diseases

Associated diseases
Want to access the full stats & trends on this tool?


Diff-seq specifications


Unique identifier OMICS_26241
Name Diff-seq
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python, R
Computer skills Advanced
Stability Stable
Maintained Yes




No version available


  • person_outline Gavin Sherlock

Publication for Diff-seq

Diff-seq citation


MitoRCA seq reveals unbalanced cytocine to thymine transition in Polg mutant mice

Sci Rep
PMCID: 4648470
PMID: 26212336
DOI: 10.1038/srep12049
call_split See protocol

[…] using the default parameters. all hits with length over 50 bp were kept as numts fragments. a total of 143 numts were defined in this way, with about 2.5× of the mitochondrial genome in size. diff-seq package of emboss suite of 6.5.7 version was used to identify single nucleotide variations between mitochondrial genome and the candidate numts. since the datasets from li et al. […]

Want to access the full list of citations?
Diff-seq institution(s)
Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA; Department of Medicine, Stanford University School of Medicine, Stanford, CA, USA; Department of Applied Physics, Stanford University, Stanford, CA, USA; Chan Zuckerberg Biohub, San Francisco, CA, USA
Diff-seq funding source(s)
Supported by Stanford Transformative Innovation Fund in Basic Biomedical Sciences Grant; National Institutes of Health Grants P50 HG007735 and U19AI057266 and Rita Allen Foundation and Human Frontiers Science Program; US Department of Defense National Defense Science and Engineering Graduate (NDSEG) Fellowship and Stanford Graduate Fellowship.

Diff-seq reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Diff-seq