DiffCorr pipeline

DiffCorr specifications

Information


Unique identifier OMICS_12493
Name DiffCorr
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Version 0.4.1
Stability Stable
Requirements pcaMethods, igraph, fdrtool, multtest
Maintained Yes

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Documentation


Maintainer


  • person_outline Atsushi Fukushima <>

Publication for DiffCorr

DiffCorr IN pipeline

2016
PMCID: 5585989
PMID: 28062755
DOI: 10.1093/gbe/evw280

[…] of p-values was controlled for a false discovery rate (q-value) by the bh method (benjamini and hochberg 1995) at α = 0.05., differentially coexpressed gene pairs were detected using the r package diffcorr (fukushima 2013). briefly, the pearson correlation coefficient was calculated for each pair of genes, and fisher’s z-test was used to identify significant differential correlations […]

DiffCorr institution(s)
RIKEN Plant Science Center, Kanagawa, Japan

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