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Differential peak calling software tools | CLIP-seq data analysis

Although comparison of RNA-protein interaction profiles across different conditions has become increasingly important to understanding the function of RNA-binding proteins (RBPs), few computational approaches have been developed for quantitative…
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Piranha
Desktop

Piranha

A peak-calling tool based on the zero-truncated negative binomial regression…

A peak-calling tool based on the zero-truncated negative binomial regression model that is able to incorporate external information to guide the site identification process. Piranha can also…

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dCLIP
Desktop

dCLIP

An easy-to-use command line tool for quantitative CLIP-seq comparative analysis.

An easy-to-use command line tool for quantitative CLIP-seq comparative analysis.

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PARma
Desktop

PARma

A complete data analysis software for AGO-PAR-CLIP experiments to identify…

A complete data analysis software for AGO-PAR-CLIP experiments to identify target sites of microRNAs as well as the microRNA binding to these sites.

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DRME
Desktop

DRME Differential RNA MEthylation

A software package for the differential RNA methylation analysis at small…

A software package for the differential RNA methylation analysis at small sample size scenario from MeRIP-Seq data. The proposed model can effectively describe within-group biological variability at…

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Pyicoenrich
Desktop

Pyicoenrich

Applies enrichment analysis on any type of sequencing data from two conditions.…

Applies enrichment analysis on any type of sequencing data from two conditions. User can find out how significant the difference of these two conditions are in terms of the number of reads…

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