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Detectes differentially methylated genes based on a Bayesian framework. The DM-BLD approach features a joint model to capture both the local dependency of measured loci and the dependency of methylation changes in samples. Specifically, the local dependency is modeled by Leroux conditional autoregressive structure; the dependency of methylation changes is modeled by a discrete Markov random field. A hierarchical Bayesian model is developed to fully take into account the local dependency for differential analysis, in which differential states are embedded as hidden variables.

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DM-BLD versioning

No versioning.

DM-BLD classification

DM-BLD specifications

Software type:
Package
Restrictions to use:
None
Programming languages:
MATLAB
Version:
2.0
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Stability:
Stable

Publications

DM-BLD support

Documentation

Maintainer

Credits

Institution(s)

Bradley Department of Electrical and Computer Engineering, Virginia Polytechnic Institute and State University, Arlington, VA, USA; Department of Oncology, Lombardi Comprehensive Cancer Center, Georgetown University Medical Center, Washington, DC, USA

Funding source(s)

This work was supported in part by the National Institutes of Health (CA149653, CA149147, CA184902, CA164384).

Link to literature

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