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Differential peak calling software tools | ChIP sequencing data analysis

Increasing number of ChIP-seq experiments are investigating transcription factor binding under multiple experimental conditions, for example, various treatment conditions, several distinct time points and different treatment dosage levels. Hence, identifying differential binding sites across multiple conditions is of practical importance in biological and medical research.

Source text:
(Liang and Keles, 2012) Detecting differential binding of transcription factors with ChIP-seq. Bioinformatics.

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