diffloop specifications

Information


Unique identifier OMICS_14597
Name diffloop
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A interaction count between putatively interacting anchors
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License MIT License
Computer skills Advanced
Version 1.8.0
Stability Stable
Requirements
limma, methods, stats, plyr, graphics, Biobase, IRanges, GenomicRanges, utils, testthat, S4Vectors, GenomeInfoDb, rtracklayer, grDevices, edgeR, locfit, dplyr, ggplot2, DESeq2, ggrepel, biomaRt, data.table, rmarkdown, knitr, reshape2, foreach, matrixStats, statmod, readr, pbapply, Sushi, diffloopdata
Maintained Yes

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Documentation


Maintainer


  • person_outline Martin Aryee <>

Publication for diffloop

diffloop institution(s)
Department of Biostatistics, Harvard TH Chan School of Public Health, Boston, MA, USA; Department of Pathology, Massachusetts General Hospital, Boston, MA, USA; Broad Institute of MIT and Harvard, Cambridge, MA, USA
diffloop funding source(s)
Supported by NSF Graduate Research Fellowship #DGE1144152 and by a Massachusetts General Hospital Department of Pathology startup fund.

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