DiffSplice specifications

Unique identifier:
OMICS_01330
Interface:
Command line interface
Input data:
RNA-seq alignment files.
Output data:
Alternative splicing modules (ASMs).
Operating system:
Unix/Linux, Mac OS
Version:
0.1.2
Requirements:
g++
Software type:
Application/Script, Package/Module
Restrictions to use:
None
Input format:
SAM
Output format:
GTF + TXT
Computer skills:
Advanced
Stability:
Beta
Maintained:
Yes

versioning

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DiffSplice distribution

download

DiffSplice support

Maintainer

  • Jinze Liu <>

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Publications

Institution(s)

Department of Computer Science, University of Kentucky, Lexington, KY, USA; UNC Lineberger Comprehensive Cancer Center, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA ; Department of Computer Science, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA; Department of Nutrition, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA; Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA ; Department of Biostatistics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA ; Department of Statistics and Operations Research, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA

Funding source(s)

Supported by US National Institutes of Health [R01-HG006272]; US National Science Foundation [EF-0850237], NSF Career award [IIS-1054631], National Institutes of Health grants [RC1-HL100108, AA017376, U24-CA143848 and 3U24-CA143848-02S1, R01-CA149569-03] and UNC University Cancer Research Fund.

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