diffTF specifications


Unique identifier OMICS_30823
Name diffTF
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A file with aligned reads for each sample and the genome reference that has been used to produce the files.
Input format BAM, FASTA
Output data A differential activity value along with an empirical FDR for each TF.
Output format TSV,PDF,TXT
Operating system Unix/Linux
License MIT License
Computer skills Advanced
Stability Stable
Snakemake, samtools, bedtools, Subread
Maintained Yes




No version available

Additional information


Publication for diffTF

diffTF institution(s)
Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany; Biotech Research and Innovation Centre (BRIC), University of Copenhagen, Copenhagen, Denmark; Novo Nordisk Foundation Center for Stem Cell Biology, Copenhagen, Denmark
diffTF funding source(s)
Supported by EMBL, a postdoctoral fellowship granted by Fundación Ramón Areces and the Otto Bayer Scholarship from Bayer Foundations.

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