diffTF specifications

Information


Unique identifier OMICS_30823
Name diffTF
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A file with aligned reads for each sample and the genome reference that has been used to produce the files.
Input format BAM, FASTA
Output data A differential activity value along with an empirical FDR for each TF.
Output format TSV,PDF,TXT
Operating system Unix/Linux
License MIT License
Computer skills Advanced
Stability Stable
Requirements
Snakemake, samtools, bedtools, Subread
Maintained Yes

Download


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Versioning


No version available

Additional information


http://difftf.readthedocs.io/en/latest/

Publication for diffTF

diffTF institution(s)
Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany; Biotech Research and Innovation Centre (BRIC), University of Copenhagen, Copenhagen, Denmark; Novo Nordisk Foundation Center for Stem Cell Biology, Copenhagen, Denmark
diffTF funding source(s)
Supported by EMBL, a postdoctoral fellowship granted by Fundación Ramón Areces and the Otto Bayer Scholarship from Bayer Foundations.

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