DIMA statistics

info info

Citations per year

info

Tool usage distribution map

info info

Associated diseases

info

Popular tool citations

chevron_left Protein-protein interaction databases chevron_right
Want to access the full stats & trends on this tool?

DIMA specifications

Information


Unique identifier OMICS_02881
Name DIMA
Alternative name Domain Interaction MAp
Restrictions to use None
Maintained Yes

Publication for Domain Interaction MAp

DIMA citations

 (6)
library_books

Novel arsenic transforming bacteria and the diversity of their arsenic related genes and enzymes arising from arsenic polluted freshwater sediment

2017
Sci Rep
PMCID: 5593903
PMID: 28894204
DOI: 10.1038/s41598-017-11548-8

[…] them increased the frequency of the other by more than 80%, with a p-value smaller than 10−10. Furthermore, the two residues must have been present in at least 20% of the sequences, as determined by Dima & Thirumalai. For ArsCs, the sequence numbering refers to E. coli ArsC (UniProt code P08692), unless noted. For molybdopterin, A0A0U0D0V4 from Streptococcus pneumoniae was used as the reference.T […]

library_books

A Manual Segmentation Tool for Three Dimensional Neuron Datasets

2017
Front Neuroinform
PMCID: 5450622
PMID: 28620293
DOI: 10.3389/fninf.2017.00036

[…] nge (Ascoli, )]. In fact, different tools for the extraction of 3D neural structures have been presented in the literature (Kass et al., ; Osher and Sethian, ; Glaser and Glaser, ; Paragios et al., ; Dima et al., ; Vese and Chan, ; Rohlfing et al., ; Wolf et al., ; Basu et al., ; Mukherjee et al., ; Quan et al., ), but none of them represents a robust system with general applicability. Beyond the […]

library_books

2015 Brainhack Proceedings

2016
GigaScience
PMCID: 5103253
DOI: 10.1186/s13742-016-0147-0

[…] PM, Andreassen OA, Arias-Vasquez A, Bearden CE, Boedhoe PS, Brouwer RM, Buckner RL, Buitelaar JK, Bulayeva KB, Cannon DM, Cohen RA, Conrod PJ, Dale AM, Deary IJ, Dennis EL, de Reus MA, Desrivieres S, Dima D, Donohoe G, Fisher SE, Fouche JP, Francks C, Frangou S, Franke B, Ganjgahi H, Garavan H, Glahn DC, Grabe HJ, Guadalupe T, Gutman BA, Hashimoto R, Hibar DP, Holl, D, Hoogman M, Pol HE, Hosten N, […]

library_books

Structure Prediction of RNA Loops with a Probabilistic Approach

2016
PLoS Comput Biol
PMCID: 4975501
PMID: 27494763
DOI: 10.1371/journal.pcbi.1005032

[…] effort of structure prediction, merits specific attention. First, this is because RNA functions often reside in loop regions and about 46% of nucleotides in an RNA chain remain unpaired, according to Dima and her colleagues’ research []. Some people mistake loop regions as unstructured. Some people mistake loop regions as structured. There are stacking interactions between neighboring bases, and o […]

library_books

Extending Ripley’s K Function to Quantify Aggregation in 2 D Grayscale Images

2015
PLoS One
PMCID: 4670231
PMID: 26636680
DOI: 10.1371/journal.pone.0144404

[…] file was obtained by repeatedly opening the image using progressively larger radii and obtaining the pixel value sum of the resulting image [,].We employed the bivariate similarity index described by Dima et al to illustrate the comparative accuracy and specificity of the two approaches described []. The bivariate similarity index, which is itself an extension of the widely used Jaccard Similary I […]

library_books

Comparing human–Salmonella with plant–Salmonella protein–protein interaction predictions

2015
Front Microbiol
PMCID: 4309195
PMID: 25674082
DOI: 10.3389/fmicb.2015.00045

[…] ions (; ; ). Thus, interolog approaches make use of available information from sequence, domain, and PPI databases. Whereas used iPfam and DIP databases as information input to their approach, used DIMA 3.0 and SIMAP databases and obtained domain information from iPfam and 3DID databases, protein sequence information from uniprot and known PPIs from BIANA that integrates available data from 10 […]


Want to access the full list of citations?
DIMA institution(s)
Department of Genome Oriented Bioinformatics, Technische Universität München, Wissenschaftszentrum Weihenstephan, Freising, Germany

DIMA reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review DIMA