Dintor specifications

Information


Unique identifier OMICS_15018
Name Dintor
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Perl, Python
License MIT License
Computer skills Advanced
Stability Stable
Requirements
Galaxy, Apache
Source code URL https://dintor.eurac.edu/static/di-data/latest/dintor-src.tgz
Maintained Yes

Versioning


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Maintainer


  • person_outline Christian Weichenberger <>

Publication for Dintor

Dintor in publications

 (4)
PMCID: 5765210
PMID: 29270911
DOI: 10.1007/s10522-017-9741-5

[…] to combine the different aging datasets and protein interaction networks, their respective input identifier systems were converted to entrez gene identifiers. the conversion was done using the dintor software platform (weichenberger et al. ) with gene mappings for 25,788 unique entrez identifiers from ensembl release 75 (yates et al. ). ambiguous input identifiers that could […]

PMCID: 5723071
PMID: 29221435
DOI: 10.1186/s12881-017-0503-7

[…] from the gene ontology [] (go) were used as an approximation. all biological process annotations of pkp2 and all their annotated proteins were queried from the go database version 2016.7 using the dintor goannotator tool []. processes were restricted to those where at least half of their annotated genes were expressed in the heart and all genes annotated to these processes were selected, […]

PMCID: 5428484
PMID: 28336965
DOI: 10.1038/s41598-017-00465-5

[…] considered significant at the level of α = 0.01 after bonferroni adjustment for multiple hypothesis testing of 30 measures (six ss measures times five mixing strategies)., our software extends the dintor framework for functional similarity analysis and is implemented in the python programming language. we make use of a client/server architecture, where the computation server is decoupled […]

PMCID: 4947862
PMID: 27468419
DOI: 10.1002/mgg3.214

[…] sift (ng and henikoff ), polyphen‐2 (adzhubei et al. ), gerp (cooper et al. ), and corresponding gene ids were queried from the ensembl database version 75 (cunningham et al. ) using the dintor software suit (weichenberger et al. ). condel 2.0 scores db‐version 05 (gonzález‐pérez and lópez‐bigas ) (weighted average of fathmm (shihab et al. ) and mutationassessor (reva et al. )), […]


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Dintor institution(s)
Center for Biomedicine, European Academy of Bolzano/Bozen (EURAC), (Affiliated to the University of Lübeck, Lübeck, Germany), Bolzano, Italy; Deutsches Krebsforschungszentrum (DKFZ), Heidelberg, Germany
Dintor funding source(s)
The research was funded by the Department of Innovation, Research, Development and Cooperatives of the Autonomous Province of Bolzano-South Tyrol.

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