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DIP specifications


Unique identifier OMICS_01905
Name DIP
Alternative name Database of Interacting Proteins
Restrictions to use None
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/Database_of_Interacting_Proteins


  • person_outline Fio M. McCarthy

Publications for Database of Interacting Proteins

DIP citations


Integrative network analyses of wilt transcriptome in chickpea reveal genotype dependent regulatory hubs in immunity and susceptibility

Sci Rep
PMCID: 5916944
PMID: 29695764
DOI: 10.1038/s41598-018-19919-5

[…] We have built network based on the microarray analysis in association with known protein-protein interaction data from (Database of Interacting Proteins) DIP databases in absence of chickpea interactome. We followed a following strategy: homology search of EST sequences associated with the microarray probe IDs was perf […]


Molecular Interaction Search Tool (MIST): an integrated resource for mining gene and protein interaction data

Nucleic Acids Res
PMCID: 5753374
PMID: 29155944
DOI: 10.1093/nar/gkx1116

[…] kinases and their substrates are annotated in the literature as having genetic and/or physical interactions with one another. There are many public resources providing interaction data. For example, Database of Interacting Proteins (DIP) () was built on interactions manually curated based on small-scale studies from the literature, providing a small but well-annotated network. Resources like BioG […]


Evaluating the associations between human circadian rhythms and dysregulated genes in liver cancer cells

PMCID: 5727601
PMID: 29250165
DOI: 10.3892/ol.2017.7109

[…] nteractome compiled from various databases, including Pathway Commons (), Biological General Repository for interaction Datasets (BioGRID) (), Human Protein Reference Database (), ConsensusPathDB (), Database of Interacting Proteins () and the Breast Cancer Information Core and Michigan Molecular Interactions (), and identified to be involved in circadian rhythms. Only the connected component of t […]


Protein protein interaction analysis to identify biomarker networks for endometriosis

PMCID: 5704338
PMID: 29201163
DOI: 10.3892/etm.2017.5185

[…] nsight into gene interactions by examining significant functional modules (). The default option is ‘Human Database’ that combines data from a variety of public PPI sources, including BioGRID (), the Database of Interacting Proteins (), the Human Protein Reference Database (), IntAct (), the Molecular INTeraction database (), REACTOME () and the Signaling Pathways Integrated Knowledge Engine (). T […]


The effect of Bu Zhong Yi Qi decoction on simulated weightlessness induced muscle atrophy and its mechanisms

PMCID: 5647051
PMID: 28849026
DOI: 10.3892/mmr.2017.7287

[…] he IntAct Molecular Interaction Database (IntAct; version 20100628; http://www.ebi.ac.uk/intact/) (), the Molecular INTeraction database (MINT; version 20100505; http://mint.bio.uniroma2.it/) (), the Database of Interacting Proteins (DIP; version 20100614; http://dip.doe-mbi.ucla.edu) () and the Protein Data Bank (PDB; http://www.rcsb.org/pdb/home/home.do) provided by Gibson and Goldberg ().After […]


Across proteome modeling of dimer structures for the bottom up assembly of protein protein interaction networks

BMC Bioinformatics
PMCID: 5427563
PMID: 28499419
DOI: 10.1186/s12859-017-1675-z

[…] t PPI networks is validated using E. coli as a model organism. Protein interaction data for E. coli consisting of 13,374 known interactions formed by 2,994 bacterial proteins were downloaded from the Database of Interacting Proteins (DIP) [] in March 2016. We removed from the original dataset redundant proteins as well as those targets longer than 600 residues, which may be difficult to model with […]


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DIP institution(s)
Howard Hughes Medical Institute, UCLA-DOE Institute for Genomics and Proteomics, USA

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