DIpro protocols

DIpro specifications

Information


Unique identifier OMICS_04652
Name DIpro
Alternative name DIsulphide bridge prediction
Software type Framework/Library
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Computer skills Advanced
Version 2.0
Stability Stable
Requirements SSpro
Maintained Yes

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Documentation


Maintainer


  • person_outline Pierre Baldi <>

Information


Unique identifier OMICS_04652
Name DIpro
Alternative name DIsulphide bridge prediction
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Pierre Baldi <>

Publication for DIsulphide bridge prediction

DIpro IN pipeline

2017
PMCID: 5524358
PMID: 28742131
DOI: 10.1371/journal.pone.0181940

[…] and netnglyc (http://www.cbs.dtu.dk/services/netnglyc/), respectively. pfam (http://pfam.janelia.org/) was used to search for protein domains. protein disulfide bonds were predicted using dipro (http://scratch.proteomics.ics.uci.edu/)., molecular modeling of mature ataga and lhaga was done with the phyre server using default parameters (http://www.sbg.bio.ic.ac.uk/phyre2/) [25]. […]

DIpro institution(s)
Institute for Genomics and Bioinformatics, School of Information and Computer Sciences, University of California, Irvine, CA, USA
DIpro funding source(s)
This project was supported by the NIH Biomedical Informatics training grant (grant number: LM-07443-01), Grant sponsor: NSF MRI grant; Grant number: EIA-0321390; Grant sponsor: University of California System wide Biotechnology Research and Education Program, Grant sponsor: Institute for Genomics and Bioinformatics at UCI.

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