Disambiguate statistics

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Disambiguate specifications


Unique identifier OMICS_15520
Name Disambiguate
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format BAM
Output data A BAM files for ambiguous reads and a text file describing how many read pairs were assigned to each BAM file.
Output format BAM, TXT
Operating system Unix/Linux
Programming languages C++, Python
License MIT License
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes




No version available



  • person_outline Miika Ahdesmaki

Publication for Disambiguate

Disambiguate citation


Development of Novel Patient Derived Xenografts from Breast Cancer Brain Metastases

PMCID: 5673842
PMID: 29164052
DOI: 10.3389/fonc.2017.00252
call_split See protocol

[…] ty 3′ bases (Q < 10). The trimmed reads were then aligned to both the human (hg19/GRCh37) and mouse (mm10) genomes using Tophat2 (). Reads were then assigned to either the human or mouse genome using disambiguate () and ambiguous reads were discarded. Unambiguous reads were assigned to features using Rsubread () and normalized read counts were produced using the rlog function in DESeq2 (). The GEO […]

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Disambiguate institution(s)
AstraZeneca IMED Oncology, Cambridge, UK; AstraZeneca R&D Information, Cambridge, UK; AstraZeneca Oncology iMed, Waltham, USA

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