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Disambiguate specifications

Information


Unique identifier OMICS_15520
Name Disambiguate
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format BAM
Output data A BAM files for ambiguous reads and a text file describing how many read pairs were assigned to each BAM file.
Output format BAM, TXT
Operating system Unix/Linux
Programming languages C++, Python
License MIT License
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Miika Ahdesmaki <>

Publication for Disambiguate

Disambiguate citation

library_books

Development of Novel Patient Derived Xenografts from Breast Cancer Brain Metastases

2017
PMCID: 5673842
PMID: 29164052
DOI: 10.3389/fonc.2017.00252

[…] bases (q < 10). the trimmed reads were then aligned to both the human (hg19/grch37) and mouse (mm10) genomes using tophat2 (). reads were then assigned to either the human or mouse genome using disambiguate () and ambiguous reads were discarded. unambiguous reads were assigned to features using rsubread () and normalized read counts were produced using the rlog function in deseq2 (). […]


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Disambiguate institution(s)
AstraZeneca IMED Oncology, Cambridge, UK; AstraZeneca R&D Information, Cambridge, UK; AstraZeneca Oncology iMed, Waltham, USA

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