DiscML specifications

Information


Unique identifier OMICS_09937
Name DiscML
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.0.1
Stability Stable
Requirements
ape
Maintained Yes

Versioning


Add your version

Maintainer


  • person_outline Weilong Hao <>

Publication for DiscML

DiscML in publications

 (3)
PMCID: 5689173
PMID: 29145803
DOI: 10.1186/s12864-017-4242-0

[…] probabilities were inferred using the method of fitzjohn and maddison []. initial transition rates were estimated using the results of panoct orthologs obtained in step 1 and computed using the ‘discml’ function of the ‘discml’ r package, version 1.0.1 [], and the ‘ard’ transition model (assuming independent transition events, in this case, gain and loss events, for each element). this step […]

PMCID: 5714193
PMID: 29126284
DOI: 10.1093/gbe/evx232

[…] and loss at homologous sites were modeled as a two-state continuous-time markov process, with states 0 (absence) and 1 (presence) on a phylogeny. intron turnover rates were measured by the r package discml () using tree branch lengths as estimators of relative time scale, and the rates are expressed as the number of gains/losses per site per nucleotide substitution (; ). to allow direct […]

PMCID: 4478555
PMID: 25897011
DOI: 10.1534/g3.115.017822

[…] sites were modeled as a two-state continuous-time markov process, with states 0 (absence) and 1 (presence) on a phylogeny using the tree branch length as a relative time scale in the r package discml (). the turnover rate is expressed as the number of gains/losses per site per nucleotide substitution (; ). the gc42 turnover rates were estimated using the simplistic (one-parameter) model […]


To access a full list of publications, you will need to upgrade to our premium service.

DiscML institution(s)
Department of Biological Sciences, Wayne State University, Detroit, USA

DiscML reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review DiscML