DiscML statistics

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Citations per year

Number of citations per year for the bioinformatics software tool DiscML
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Tool usage distribution map

This map represents all the scientific publications referring to DiscML per scientific context
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Associated diseases

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Popular tool citations

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DiscML specifications

Information


Unique identifier OMICS_09937
Name DiscML
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.0.1
Stability Stable
Requirements
ape
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Weilong Hao

Publication for DiscML

DiscML citations

 (4)
library_books

Unraveling the evolution and coevolution of small regulatory RNAs and coding genes in Listeria

2017
BMC Genomics
PMCID: 5689173
PMID: 29145803
DOI: 10.1186/s12864-017-4242-0

[…] tate probabilities were inferred using the method of Fitzjohn and Maddison []. Initial transition rates were estimated using the results of PanOCT orthologs obtained in Step 1 and computed using the ‘DiscML’ function of the ‘DiscML’ R package, version 1.0.1 [], and the ‘ARD’ transition model (assuming independent transition events, in this case, gain and loss events, for each element). This step r […]

library_books

Genetic Drift and Indel Mutation in the Evolution of Yeast Mitochondrial Genome Size

2017
Genome Biol Evol
PMCID: 5714193
PMID: 29126284
DOI: 10.1093/gbe/evx232

[…] and loss at homologous sites were modeled as a two-state continuous-time Markov process, with states 0 (absence) and 1 (presence) on a phylogeny. Intron turnover rates were measured by the R package DiscML () using tree branch lengths as estimators of relative time scale, and the rates are expressed as the number of gains/losses per site per nucleotide substitution (; ). To allow direct and meani […]

library_books

Origin and Spread of Spliceosomal Introns: Insights from the Fungal Clade Zymoseptoria

2017
Genome Biol Evol
PMCID: 5647799
PMID: 29048531
DOI: 10.1093/gbe/evx211

[…] t character states. The rates of intron turnover and intron exchange were measured by mapping character states on a phylogeny using the tree branch length as a relative time scale using the R package DiscML (). As detailed in our previous studies, the rate is relative to nucleotide substitution rate, and the unit is expressed as the number of gains/losses per site per nucleotide substitution (, ; […]

library_books

A Dynamic Mobile DNA Family in the Yeast Mitochondrial Genome

2015
PMCID: 4478555
PMID: 25897011
DOI: 10.1534/g3.115.017822

[…] logous sites were modeled as a two-state continuous-time Markov process, with states 0 (absence) and 1 (presence) on a phylogeny using the tree branch length as a relative time scale in the R package DiscML (). The turnover rate is expressed as the number of gains/losses per site per nucleotide substitution (; ). The GC42 turnover rates were estimated using the simplistic (one-parameter) model by […]


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DiscML institution(s)
Department of Biological Sciences, Wayne State University, Detroit, USA

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