DiscoMark specifications

Unique identifier:
OMICS_13275
Interface:
Command line interface
Input data:
Orthologous nucleotide sequence (1 folder per taxon, 1 file per orthologous group).
Output data:
A set of PCR primer pairs
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Version:
0.9
Requirements:
NCBI Blast+, MAFFT, TrimAl, BioPython, SqlAlchemy
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTA
Output format:
HTML
Programming languages:
Python
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

versioning

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DiscoMark support

Documentation

Maintainer

  • Sereina Rutschmann <>

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Credits

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Publications

Institution(s)

Leibniz-Institute of Freshwater Ecology and Inland Fisheries (IGB), Berlin, Germany; Berlin Center for Genomics in Biodiversity Research, Berlin, Germany; Department of Biochemistry, Genetics and Immunology, University of Vigo, Vigo, Spain; Sackler Institute for Comparative Genomics, American Museum of Natural History, New York, NY, USA; Biosystematics Group, Wageningen University, Wageningen, Netherlands; Alexandra Institute, Aarhus, Denmark

Funding source(s)

Research was partially supported by the Leibniz Association (PAKT für Forschung und Innovation “FREDIE” project), the Swiss National Science Foundation (Early PostDoc.Mobility grant P2SKP3_15869), and a visiting fellowship from the Japan Association for the Advancement of Science (L-15543).

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