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Discovering Single Nucleotide Polymorphism discoSnp++

Alternative name: DiscoSnp

Detects both heterozygous and homozygous isolated single nucleotide polymorphisms (SNPs) from any number of read datasets. discoSnp++ ranks predictions and outputs quality and coverage per allele to facilitate downstream genotyping analyses. It requires some computer resources, shows precise precision/recall values, and predictions are unlikely to be false positives.

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discoSnp++ classification

discoSnp++ specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
C++, Python
Computer skills:
Advanced
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux
License:
CeCILL version 2.1, GNU Affero General Public License version 3
Version:
2.3.0
Maintained:
Yes

discoSnp++ distribution

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discoSnp++ support

Documentation

Maintainers

  • Pierre Peterlongo <>
  • Jeremy Gauthier <>

Credits

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Publications

Institution(s)

IRISA Inria Rennes Bretagne Atlantique, GenScale team, Rennes, France; CHU Pontchaillou, Rennes, France

Funding source(s)

Supported by the French ANR-12-BS02-0008 Colib’read project and by the ANR-12-EMMA-0019-01 GATB project.

Link to literature

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