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Discovery Studio® Visualizer specifications

Information


Unique identifier OMICS_14111
Name Discovery Studio® Visualizer
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Windows
Computer skills Medium
Stability Stable
Registration required Yes
Maintained Yes

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Documentation


Discovery Studio® Visualizer citations

 (122)
library_books

Overexpressed HDAC8 in cervical cancer cells shows functional redundancy of tubulin deacetylation with HDAC6

2018
PMCID: 5930436
PMID: 29716651
DOI: 10.1186/s12964-018-0231-4

[…] 273, Ser150, Tyr100, Cys352, Gln232 of HDAC8 [Fig. (c)]. The ZDOCK score of the tubulins are provided in (Table. ). All the Figures related to protein-protein interaction studies were generated using Discovery Studio Visualizer version 4.1.Further in silico mutational studies were carried out to confirm the interaction between Lys 40 of Alpha tubulin and Pro205 of HDAC8. The Lys (40) of alpha tubu […]

library_books

Molecular modeling, dynamics simulations, and binding efficiency of berberine derivatives: A new group of RAF inhibitors for cancer treatment

2018
PLoS One
PMCID: 5863970
PMID: 29565994
DOI: 10.1371/journal.pone.0193941

[…] To demonstrate inter-molecular interactions (e.g., hydrophobic, h-bonds, halogen bonds, and π/aromatic interactions), the Accelrys Discovery Studio Visualizer version 4.1 (DS) was applied. In addition to DS, intermolecular hydrogen-bonds were also checked using the LigPlot+ v.1.4.5, PyMol v.1.7.4.4, UCSF Chimera.1.10.2, and AutoD […]

library_books

Computational Insight Into the Structural Organization of Full Length Toll Like Receptor 4 Dimer in a Model Phospholipid Bilayer

2018
Front Immunol
PMCID: 5857566
PMID: 29593733
DOI: 10.3389/fimmu.2018.00489

[…] c conflicts between atoms. Fourth, all three individual domains were aligned on a straight axis and peptide bonds were patched between the extreme C- and N-terminal residues of adjacent domains using Discovery Studio Visualizer 4.0 (DSV 4.0) program (Dassault Systèmes, San Diego, CA, USA). Another round of energy minimization was performed to correct interatomic conflicts within the full-length TL […]

call_split

Ursolic Acid Hydrazide Based Organometallic Complexes: Synthesis, Characterization, Antibacterial, Antioxidant, and Docking Studies

2018
PMCID: 5857580
PMID: 29594100
DOI: 10.3389/fchem.2018.00055
call_split See protocol

[…] oth case, the RMSD value are within the threshold limit. In all cases, RMSD value of <2.0 Å is considered as accurate in predicting binding orientation of ligand. The binding poses were studied using discovery studio visualizer. […]

call_split

Structure Activity Relationships of Thiazolyl Resorcinols, Potent and Selective Inhibitors of Human Tyrosinase

2018
Int J Mol Sci
PMCID: 5877551
PMID: 29495618
DOI: 10.3390/ijms19030690
call_split See protocol

[…] o account. For each compound, 20 runs with a maximum number of 500 iterations were carried out. The top ranking poses were kept and further refined using the Ligand Energy Inspector subroutine of MD. Discovery Studio Visualizer 4.0 (Accelrys, San Diego, CA, USA) was used for visual data analysis and presentation. […]

library_books

A structural preview of aquaporin 8 via homology modeling of seven vertebrate isoforms

2018
BMC Struct Biol
PMCID: 5816522
PMID: 29454339
DOI: 10.1186/s12900-018-0081-8

[…] tial multiple sequence alignment was created for all models together with AtTIP2;1 by Clustal Omega (v1.2.0) [] and modified in loop C to match LCP phenylalanines to histidine 131 from AtTIP2;1 using Discovery Studio Visualizer (Accelrys Software Inc). A phylogenetic tree was calculated in MEGA [] using Neighbor-Joining algorithm []. The distances are computed by the JTT matrix-based method []. Fi […]

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